View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_6 (Length: 637)
Name: NF5931_high_6
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 7320189 - 7319901
Alignment:
| Q |
24 |
atggtgatagtggatagagagaaaggacaagggaggaaatgaatgagttgtgcaattgagaaattcatttttcttatatagtcgtatgttgtagctcaac |
123 |
Q |
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| T |
7320189 |
atggtgatagtggatagagagaaaggacaagggaggaaatgaatgagttgtgcaattgagaaattcatttttcttatatagtcgtatgttgtagctcaac |
7320090 |
T |
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| Q |
124 |
cggtaatattgacatcttcatccggattcaaatctgaaacattatagttgtgtgtgtgaatttcaagtggtgttttctacttcatcaaccaaagnnnnnn |
223 |
Q |
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| T |
7320089 |
ctgtaatattgacatcttcatccggattcaaat------------agttgtgtgtgtgaatttcaagtggtgttttctacttcatcaaccaaagaaaaaa |
7320002 |
T |
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| Q |
224 |
ncaattatataagttaacttcagaacaatataattgtcaaactcacggataaactcatagacttgtgagaattcatgagtctagaaggcaaaaacgagtg |
323 |
Q |
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| T |
7320001 |
acaattatataagttaactttagaacaatataattgtcaaactcacggataaacttatagacttgtgagaattcatgagtctagaaggcaaaaacgagtg |
7319902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 364 - 465
Target Start/End: Complemental strand, 7319861 - 7319760
Alignment:
| Q |
364 |
acgccaccacatttgagctcatctttgcagatgtgaaatatattatatcaaaatatattatatcatttcattatccacctaattttcatttgctgatgtg |
463 |
Q |
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| T |
7319861 |
acgccaccacatttgagttcatctttgcagatgtgaaatatattatatcaaaatatattatatcatttcattatccacctaatttttatttgctgatgtg |
7319762 |
T |
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| Q |
464 |
ga |
465 |
Q |
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| T |
7319761 |
ga |
7319760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 7302170 - 7301987
Alignment:
| Q |
36 |
gatagagagaaaggacaagggaggaaatgaatgagttgtgcaattgagaaattcatttttctt-------atatagtcgtatgttgtagctcaaccggta |
128 |
Q |
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| T |
7302170 |
gatagagagagagcacgagggaggaaaagagtgagttgtgcaattgagaaattcctttctcttgaaatttatatgcttgtatggtgtagctcaattggta |
7302071 |
T |
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| Q |
129 |
atattgacatcttcatccggattcaaatctgaaacattatagttgtgtgtgtgaatttcaagtggtgttttctacttcatcaac |
212 |
Q |
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| T |
7302070 |
atattgatattttcgtttgggttctaacatgagacattatagttgtgtgtgtgaattttaagtggtgtttaccactttatcaac |
7301987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 539 - 631
Target Start/End: Complemental strand, 7319686 - 7319594
Alignment:
| Q |
539 |
ctacaattaagcctttcttttataattgtannnnnnnnnnnnngaatgccattatctctcaagtgtctagtctcccaaggttttgatgatgtc |
631 |
Q |
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| T |
7319686 |
ctacaattaagcctttcttttataattgtatttttctttttttgaatgccattatctctcaagtgtctagtctcccaaggttttgatgttgtc |
7319594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 448
Target Start/End: Complemental strand, 1457363 - 1457330
Alignment:
| Q |
415 |
aatatattatatcatttcattatccacctaattt |
448 |
Q |
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| T |
1457363 |
aataaattatatcatttcattatccacctaattt |
1457330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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