View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_high_64 (Length: 275)

Name: NF5931_high_64
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_high_64
NF5931_high_64
[»] chr2 (8 HSPs)
chr2 (127-275)||(14096250-14096398)
chr2 (129-233)||(18977203-18977307)
chr2 (129-218)||(7089079-7089168)
chr2 (134-218)||(33755203-33755287)
chr2 (129-217)||(37078802-37078890)
chr2 (51-125)||(16592594-16592668)
chr2 (129-215)||(17690459-17690545)
chr2 (134-215)||(16429724-16429805)
[»] chr3 (13 HSPs)
chr3 (128-275)||(50650467-50650614)
chr3 (129-275)||(12938397-12938543)
chr3 (131-275)||(31658895-31659038)
chr3 (129-271)||(29833271-29833413)
chr3 (157-271)||(33216734-33216848)
chr3 (129-218)||(53282148-53282237)
chr3 (129-218)||(36950291-36950380)
chr3 (127-217)||(20104175-20104265)
chr3 (129-214)||(29703673-29703758)
chr3 (129-177)||(50360241-50360289)
chr3 (127-217)||(5232799-5232889)
chr3 (129-215)||(39833366-39833452)
chr3 (81-125)||(14148426-14148470)
[»] chr4 (8 HSPs)
chr4 (129-275)||(27292942-27293088)
chr4 (129-275)||(4919011-4919156)
chr4 (1-125)||(24474358-24474482)
chr4 (129-275)||(42976327-42976472)
chr4 (129-221)||(24228273-24228365)
chr4 (124-218)||(15531344-15531438)
chr4 (129-215)||(20133265-20133351)
chr4 (129-211)||(55919526-55919608)
[»] chr1 (5 HSPs)
chr1 (128-275)||(27286159-27286306)
chr1 (129-275)||(52385889-52386035)
chr1 (130-275)||(39241555-39241700)
chr1 (127-215)||(12981374-12981462)
chr1 (129-200)||(49409760-49409831)
[»] chr7 (7 HSPs)
chr7 (129-275)||(19436668-19436814)
chr7 (129-275)||(29834020-29834166)
chr7 (132-275)||(29258386-29258528)
chr7 (126-215)||(45972275-45972364)
chr7 (128-217)||(47327796-47327885)
chr7 (129-217)||(29243235-29243323)
chr7 (129-198)||(34093973-34094042)
[»] chr5 (7 HSPs)
chr5 (129-275)||(30624860-30625006)
chr5 (128-275)||(41413518-41413665)
chr5 (127-275)||(1828406-1828554)
chr5 (128-275)||(40313872-40314019)
chr5 (129-271)||(31482148-31482290)
chr5 (129-218)||(39884550-39884639)
chr5 (128-215)||(24788459-24788546)
[»] chr6 (5 HSPs)
chr6 (134-275)||(12938643-12938784)
chr6 (172-275)||(28138115-28138217)
chr6 (154-272)||(33694802-33694919)
chr6 (131-214)||(12466398-12466481)
chr6 (82-123)||(20891400-20891441)
[»] chr8 (3 HSPs)
chr8 (129-271)||(13802759-13802901)
chr8 (129-218)||(3879600-3879689)
chr8 (128-215)||(531538-531625)
[»] scaffold0166 (1 HSPs)
scaffold0166 (128-215)||(30842-30929)
[»] scaffold0338 (1 HSPs)
scaffold0338 (84-125)||(18970-19011)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 127 - 275
Target Start/End: Original strand, 14096250 - 14096398
Alignment:
Q  127 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggac 226  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14096250 atgggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggac 14096349  T
Q  227 aaattctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14096350 aaattctaatatggatcacttgtttcatatgttccaccatagacaagtt 14096398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 18977307 - 18977203
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||||||||||||| |  || |||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| | | |||    
T  18977307 gggagcttctatgaagaagtcaggaaaatgacttcttcgatgaagtcgtttaattcagccaatcagattttaagtgatgacacgtcacatgtagaggcaa 18977208  T
Q  229 attct 233  Q
    |||||    
T  18977207 attct 18977203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 7089079 - 7089168
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 218  Q
    ||||||||||||||||||||| || ||  |||||||||| ||||||||||| | |  |||||| ||||||||||| ||||||||||||||    
T  7089079 gggagcttctatgaagaagtcagaaaaacgactttttcgatgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagat 7089168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 33755287 - 33755203
Alignment:
Q  134 cttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 218  Q
    |||||||||||||||| || ||  |||||||||||||||||||||| | |  | |||| ||||||||||| ||||||||||||||    
T  33755287 cttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggtcaattagatttcaagtgatgacacgtcagat 33755203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 37078802 - 37078890
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 217  Q
    ||||||||||| ||||||||| |  || |||||| |||||||||||||| | | |  ||||||||||||| |||| |||||||||||||    
T  37078802 gggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 37078890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 16592594 - 16592668
Alignment:
Q  51 tttttataaaaaccaatttatgcataattagagaaaatggagatgttgcatctaaactctttcgaataattgatt 125  Q
    ||||||| ||||  || ||||||||  || |||||||||  ||||| ||||||||||||||||||||||||||||    
T  16592594 tttttatgaaaataaagttatgcatgttttgagaaaatgatgatgtagcatctaaactctttcgaataattgatt 16592668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 17690459 - 17690545
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    |||||||||||||| ||| || |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  17690459 gggagcttctatgatgaactcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 17690545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 16429724 - 16429805
Alignment:
Q  134 cttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    ||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  16429724 cttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaataggccaatcagattttaaatgatgacacgtca 16429805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 50650614 - 50650467
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 227  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50650614 tgggagcttctatgaagaagtcggggaattgactttttcggtaaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaca 50650515  T
Q  228 aattctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50650514 aattctaatatggatcacttgtttcatatgttccaccatagacaagtt 50650467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 12938397 - 12938543
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    |||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| |||||||||||||||||| ||||||    
T  12938397 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaa 12938496  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  12938497 attataatatggatcacttgcttcatatgttccaccgtggacaagtt 12938543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 275
Target Start/End: Complemental strand, 31659038 - 31658895
Alignment:
Q  131 gagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaat 230  Q
    ||||||||||||| |||| | | ||||||||| ||||||| |||||||||||||| ||||||||||||||||  ||||||| ||| ||| | ||| ||||    
T  31659038 gagcttctatgaaaaagttgaacaattgacttcttcggtgcagtcgtttaattcaaccaatcagatttcaagagatgacacatcacatg-taggataaat 31658940  T
Q  231 tctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||||||||||||||||| | |||| || ||||||||||||||||    
T  31658939 tctaatatggatcacttgctccataagtcccaccatagacaagtt 31658895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 129 - 271
Target Start/End: Original strand, 29833271 - 29833413
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||| ||||||||| |  || |||||| || ||||||||||||| | | | |||||||||||| |||| ||||||||||||| ||  ||||||    
T  29833271 gggagcttctacgaagaagtcagtaaaatgacttctttggtgaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaaggacaa 29833370  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagaca 271  Q
    ||| |||||||||||||||| | ||||||||||||||||||||    
T  29833371 attataatatggatcacttgctccatatgttccaccatagaca 29833413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 33216848 - 33216734
Alignment:
Q  157 tgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatat 256  Q
    |||||| |||||||||||||||| | | |||||||||||||| |||| ||||||||||  | ||   |||||||| |||||||||||||||| | |||||    
T  33216848 tgacttcttcggtgaagtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatgacaaattataatatggatcacttgctccatat 33216749  T
Q  257 gttccaccatagaca 271  Q
    |||||||||||||||    
T  33216748 gttccaccatagaca 33216734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 53282148 - 53282237
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 218  Q
    ||||||||||||||||||||| || || |||||| |||||||||||||||| | |  |||||||||||||||||| ||||||||||||||    
T  53282148 gggagcttctatgaagaagtcagaaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagatttcaagtgatgacacgtcagat 53282237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 36950380 - 36950291
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 218  Q
    ||||||||||||||||||||| || ||  |||||||||||||||||||||| | |  |||||| ||||||||||| ||||||||||||||    
T  36950380 gggagcttctatgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagat 36950291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 20104175 - 20104265
Alignment:
Q  127 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 217  Q
    ||||||||||||| ||||||||| |  || |||||||||||||||| |||||| | |  ||||||||||||| |||| |||||||||||||    
T  20104175 atgggagcttctacgaagaagtcaggaaaatgactttttcggtgaaatcgtttgaataggccaatcagattttaagtgatgacacgtcaga 20104265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 29703758 - 29703673
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtc 214  Q
    ||||||||||| | ||||||| || || ||||||||||||||||||||||| | |   ||||||||||||||||| ||||||||||    
T  29703758 gggagcttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtc 29703673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 50360289 - 50360241
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgt 177  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  50360289 gggagcttctacgaagaagtcggggaattgactttttcggtgaagtcgt 50360241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 5232799 - 5232889
Alignment:
Q  127 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 217  Q
    |||| |||||||| ||||||||| |  || |||||| |||||||||||||| | | |  ||||||||||||| |||| |||||||||||||    
T  5232799 atggaagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 5232889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 39833452 - 39833366
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  39833452 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 39833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 14148426 - 14148470
Alignment:
Q  81 gagaaaatggagatgttgcatctaaactctttcgaataattgatt 125  Q
    ||||||||| |||||| |||||||||||||||| || ||||||||    
T  14148426 gagaaaatgaagatgtagcatctaaactctttcaaagaattgatt 14148470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 27292942 - 27293088
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  27292942 gggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaa 27293041  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27293042 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 27293088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 4919011 - 4919156
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4919011 gggagcttctatgaagaagtcggggaattgactttttcggtgaagtcgtt-aattcagccaatcagatttcaagccatgacacgtcagatgttgggacaa 4919109  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4919110 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 4919156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 24474358 - 24474482
Alignment:
Q  1 ttaaggcaccggaagccgcatcgatcgcttgagcattgactgtgcgtgattttttataaaaaccaatttatgcataattagagaaaatggagatgttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  24474358 ttaaggcaccggaagccgcatcgatcgcttgagcattgactgtgcgtgattttttatgaaaaccaatttatgcataatttgagaaaatgaagatgttgca 24474457  T
Q  101 tctaaactctttcgaataattgatt 125  Q
    || |||| |||||||||||||||||    
T  24474458 tcaaaaccctttcgaataattgatt 24474482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 42976327 - 42976472
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    |||||||||||||||||||||||| ||||||||| |||| || |||||||||||||| ||||||||||||||||  ||||||||||| ||| | | | ||    
T  42976327 gggagcttctatgaagaagtcggacaattgacttcttcgatgcagtcgtttaattcaaccaatcagatttcaagagatgacacgtcacatg-tagaataa 42976425  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||| |||||||||||||||| | |||| || ||||||||||||||||    
T  42976426 attttaatatggatcacttgctccataagtcccaccatagacaagtt 42976472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 24228365 - 24228273
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgtt 221  Q
    |||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| ||||||||||||||||||    
T  24228365 gggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgtt 24228273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 15531438 - 15531344
Alignment:
Q  124 ttgatgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 218  Q
    |||| ||||||||||| | ||||||| || || |||||||||| |||||||||||| | | | ||||||||||||||||| |||| |||||||||    
T  15531438 ttgaagggagcttctacggagaagtcagaaaaatgactttttcagtgaagtcgtttgaatgaaccaatcagatttcaagtgatgatacgtcagat 15531344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 20133265 - 20133351
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  20133265 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 20133351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 55919608 - 55919526
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacac 211  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||    
T  55919608 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacac 55919526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 128 - 275
Target Start/End: Original strand, 27286159 - 27286306
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 227  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  27286159 tgggagcttctatgaagaagtcgaggaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaa 27286258  T
Q  228 aattctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    | || |||||||||||||||| ||||||||||||||||||||||||||    
T  27286259 atttttaatatggatcacttgcttcatatgttccaccatagacaagtt 27286306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 129 - 275
Target Start/End: Complemental strand, 52386035 - 52385889
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  52386035 gggagcttctatgaagaagttgggaaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaa 52385936  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  52385935 attctaaaatggatcacgtgtttcatatgttccaccatagacaagtt 52385889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 39241555 - 39241700
Alignment:
Q  130 ggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgttt-aattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    |||||||||||||||||||  |  || |||||| |||| ||||||||||| |||   | ||||||||||| |||| || ||||||||||||||| |||||    
T  39241555 ggagcttctatgaagaagttaggaaaatgacttcttcgatgaagtcgtttgaatggggtcaatcagattttaagtgataacacgtcagatgttgagacaa 39241654  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  39241655 attctaatat-gatcacttgcttcatatgttccaccatagacaagtt 39241700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 12981374 - 12981462
Alignment:
Q  127 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    |||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  12981374 atgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 12981462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 49409760 - 49409831
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttca 200  Q
    |||||||||||  ||||||||||| ||||||||| ||| | | ||||||||||||| |||||||| ||||||    
T  49409760 gggagcttctagaaagaagtcggataattgacttcttcagcgcagtcgtttaattcggccaatcaaatttca 49409831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 19436668 - 19436814
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    |||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  19436668 gggagcttttatgaagaagttggggaatagactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaa 19436767  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19436768 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 19436814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 129 - 275
Target Start/End: Complemental strand, 29834166 - 29834020
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  29834166 gggagcttctacgaagaagtcggggaattgacttttttggtaaagtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaa 29834067  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||    
T  29834066 actctaatatggatcacttgcttcatatgttccaccatagacaagtt 29834020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 29258386 - 29258528
Alignment:
Q  132 agcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaatt 231  Q
    ||||||||||||||||||||  ||||||||| |||| || ||| |||| | |  |||||||||||||||||| ||||||||||||||  | |||||||||    
T  29258386 agcttctatgaagaagtcgggcaattgacttcttcgatgcagttgtttgaatgggccaatcagatttcaagtgatgacacgtcagataat-ggacaaatt 29258484  T
Q  232 ctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||| |||||||||||| | ||| ||||||||| | ||||||||    
T  29258485 ctaacatggatcacttgctccatgtgttccaccgtggacaagtt 29258528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 45972275 - 45972364
Alignment:
Q  126 gatgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    ||||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  45972275 gatgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 45972364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 47327796 - 47327885
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 217  Q
    |||||||||||| ||||||||| |  || |||||| |||||||||||||| | | |  ||||||||||||| |||  |||||||||||||    
T  47327796 tgggagcttctacgaagaagtcaggaaaatgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagcgatgacacgtcaga 47327885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 29243235 - 29243323
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcaga 217  Q
    |||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  | ||||||||||| || | |||||||||||||    
T  29243235 gggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcaga 29243323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 34093973 - 34094042
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagattt 198  Q
    ||||||||||| ||||||||| || || |||||| ||||||| |||||||| | |  |||||||||||||    
T  34093973 gggagcttctacgaagaagtcagaaaaatgacttcttcggtgcagtcgtttgaatgggccaatcagattt 34094042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 129 - 275
Target Start/End: Original strand, 30624860 - 30625006
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||||||||||||||   ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  30624860 gggagcttctatgaagaagtcgagaaattgacttttttagtgaagtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataa 30624959  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  30624960 attttaatatggatcacttgcttcatatgttccaccatagacaagtt 30625006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 41413665 - 41413518
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 227  Q
    ||||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| |||||||||||||||||| |||||    
T  41413665 tgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggaca 41413566  T
Q  228 aattctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    |||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  41413565 aattataatatggatcacttgcttcatatgttccaccgtggacaagtt 41413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 275
Target Start/End: Original strand, 1828406 - 1828554
Alignment:
Q  127 atgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggac 226  Q
    |||||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| ||||||||||||||||||  |||    
T  1828406 atgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttatgac 1828505  T
Q  227 aaattctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||||| |||||||||||||||| ||||||||||||||| | ||||||||    
T  1828506 aaattataatatggatcacttgcttcatatgttccaccgtggacaagtt 1828554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 275
Target Start/End: Original strand, 40313872 - 40314019
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggaca 227  Q
    ||||||||||||||| ||||||||  || |||||| |||||||||||||||| | |   |||||||||||||||| |||||||||||||||||| |||||    
T  40313872 tgggagcttctatgatgaagtcgggtaaatgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggaca 40313971  T
Q  228 aattctaatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||||  ||||||||||||||| ||||||||||||||| | ||||||||    
T  40313972 aattacaatatggatcacttgcttcatatgttccaccgtggacaagtt 40314019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 271
Target Start/End: Complemental strand, 31482290 - 31482148
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||| ||||||||| |  || |||||| |||||| ||||||||| | | ||||||||| |||| |||| ||||||| ||||| ||  ||||||    
T  31482290 gggagcttctacgaagaagtcagtaaaatgacttcttcggtaaagtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaaggacaa 31482191  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagaca 271  Q
    ||| |||||||||||||||| | ||||||||||||||||||||    
T  31482190 attataatatggatcacttgctccatatgttccaccatagaca 31482148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 39884550 - 39884639
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 218  Q
    ||||| ||||| | ||||||| || || ||||||||||||||||||||||| | |   ||||||||||||||||| ||||||||||||||    
T  39884550 gggagtttctacggagaagtcagaaaaatgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcagat 39884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 24788546 - 24788459
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    ||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  24788546 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 24788459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 12938643 - 12938784
Alignment:
Q  134 cttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattct 233  Q
    |||||||||||||||||   ||||||||||||  |||||||||||||||||| |||||||||||| |||  ||||||||||||||||||||||||||| |    
T  12938643 cttctatgaagaagtcgagaaattgacttttttagtgaagtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaatttt 12938742  T
Q  234 aatatggatcacttgtttcatatgttccaccatagacaagtt 275  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  12938743 aatatggatcacttgcttcatatgttccaccatagacaagtt 12938784  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 28138217 - 28138115
Alignment:
Q  172 agtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 271  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||| |||||| | ||||||| ||| ||| ||||    
T  28138217 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatg-taggacaaattttaatatggaccacttgctccatatgtcccatcatggaca 28138119  T
Q  272 agtt 275  Q
    ||||    
T  28138118 agtt 28138115  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 33694802 - 33694919
Alignment:
Q  154 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 253  Q
    |||||||||||||||||||||||||| | |   |||||||||||| |||| ||||||||| ||||  ||| | ||||| |||||||||||||||| | ||    
T  33694802 aattgactttttcggtgaagtcgtttgaatggaccaatcagattttaagtgatgacacgttagataatggaa-aaattttaatatggatcacttgctcca 33694900  T
Q  254 tatgttccaccatagacaa 272  Q
    ||||||||| |||||||||    
T  33694901 tatgttccatcatagacaa 33694919  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 12466398 - 12466481
Alignment:
Q  131 gagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtc 214  Q
    |||||||||| | ||||| ||  ||| ||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||    
T  12466398 gagcttctatcatgaagttgggaaatagactttttcggtgcagtcgtttaattcaaccaatcaaatttcaagtcataacacgtc 12466481  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 20891441 - 20891400
Alignment:
Q  82 agaaaatggagatgttgcatctaaactctttcgaataattga 123  Q
    |||||||| |||||| ||||||||| ||||||||||||||||    
T  20891441 agaaaatgaagatgtagcatctaaattctttcgaataattga 20891400  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 271
Target Start/End: Complemental strand, 13802901 - 13802759
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagatgttgggacaa 228  Q
    ||||||||||| ||||||||| |  || ||||||||||||| ||||||||| | | | |||||||||||| |||| ||||||||||||| ||  ||||||    
T  13802901 gggagcttctacgaagaagtcagtaaaatgactttttcggtaaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaaggacaa 13802802  T
Q  229 attctaatatggatcacttgtttcatatgttccaccatagaca 271  Q
    ||| |||||||||||||||| | ||||||||||||||||||||    
T  13802801 attataatatggatcacttgctccatatgttccaccatagaca 13802759  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 3879689 - 3879600
Alignment:
Q  129 gggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtcagat 218  Q
    ||||||||||| ||||||||| || ||  |||||||||||||||||||||| | | ||||||| ||||||||||| ||||||||||||||    
T  3879689 gggagcttctacgaagaagtcagaaaaacgactttttcggtgaagtcgtttgaatgagccaattagatttcaagtgatgacacgtcagat 3879600  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 531538 - 531625
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    ||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  531538 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 531625  T

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Target: scaffold0166 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 30929 - 30842
Alignment:
Q  128 tgggagcttctatgaagaagtcggagaattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagtcatgacacgtca 215  Q
    ||||||||||||||| |||||| |  || |||||| |||||||||||||||| | |  ||||||||||||| || | |||||||||||    
T  30929 tgggagcttctatgatgaagtcaggaaaatgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 30842  T

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Target: scaffold0338 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 18970 - 19011
Alignment:
Q  84 aaaatggagatgttgcatctaaactctttcgaataattgatt 125  Q
    |||||| ||||||  |||||||||||||||||||||||||||    
T  18970 aaaatgaagatgtaacatctaaactctttcgaataattgatt 19011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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