View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_70 (Length: 258)
Name: NF5931_high_70
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 40594920 - 40594671
Alignment:
| Q |
1 |
cagctcaaccatataagcgaagtcctgcgaaatgatttgtcgataccaaccacaaccaatagtactaaactagttgacactaataatgtggcaagcctaa |
100 |
Q |
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| T |
40594920 |
cagctcaaccatataagcgaagtcctgcgaaatgatttgtcgataccaaccacaaccaatagtactaaactagttgacactaataatgtggcaagcctaa |
40594821 |
T |
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| Q |
101 |
gatgcatggatcaaagcctacaaaagaataaacctgaaaaggttccatcaggttttcatgat---ctacaacatgtttggaggcctcagagaggctttcc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
40594820 |
gatgcatggatcaaagcctacaaaagaataaacctgaaacggttccatcaggttttcatgatccacaacaacatgtttggaggcctcagagaggctttcc |
40594721 |
T |
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| Q |
198 |
ggaacgtgcagtggcgattcttagagcttggttgtttgaacatattcttc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40594720 |
ggaacgtgcagtggcgattcttagagcttggttgtttgaacattttcttc |
40594671 |
T |
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