View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_74 (Length: 251)
Name: NF5931_high_74
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_74 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 4853183 - 4852954
Alignment:
| Q |
19 |
caaaattagtttgtttgataaaaattcatatataagatgttaattttaatgtatctcattaaattactcaataattttgtattattggcaaattttgtaa |
118 |
Q |
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| T |
4853183 |
caaaattagtttgtttgattaaaattcatatataagatgttaattttaatgtatctcattgaattactcaataattttataatactgtcaaattttgtaa |
4853084 |
T |
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| Q |
119 |
acatggtttccctctttctttttctannnnnnnnactaaaacatgg-----tctcttttataagcaacg-----gtcaattaatccctgtgacctgtccc |
208 |
Q |
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| T |
4853083 |
acatggtctgtctctttc-ttgcatattttttttattaaaacatggtctcttctcttttataagcaacgggggcgtcaattaatccctgtgatttgtccc |
4852985 |
T |
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| Q |
209 |
tatatatacaatttccaataagggtggtcca |
239 |
Q |
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|||||||| ||||||||||| | |||||||| |
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| T |
4852984 |
tatatatataatttccaatatgcgtggtcca |
4852954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 4812332 - 4812293
Alignment:
| Q |
199 |
gacctgtccctatatatacaatttccaataagggtggtcc |
238 |
Q |
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| T |
4812332 |
gacctgtccctatatatacaatttccaataagggtggtcc |
4812293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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