View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_79 (Length: 240)
Name: NF5931_high_79
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_79 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 44424690 - 44424553
Alignment:
| Q |
8 |
gacatcatcatcaactatcaaacaaaaacacctagcagagttctttatgtaagtagaactctcaactcttaatctacaacaaatgacataacctcctatg |
107 |
Q |
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| T |
44424690 |
gacatcatcatcaactatcaaacaaaaacacctagcagagttctttatgtaagtagaactctcaactcttaatctacaacaattgacataacctcctata |
44424591 |
T |
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| Q |
108 |
caaaatgtttgagggggaggggtgaaatctaatatcta |
145 |
Q |
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| T |
44424590 |
caaaatgtttgagggggaggggtgaaatctaatatcta |
44424553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 44424539 - 44424502
Alignment:
| Q |
203 |
atgaatgaaataccaaaccaaaacattatgctaccatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44424539 |
atgaatgaaataccaaaccaaaacattatgctaccatt |
44424502 |
T |
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