View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_8 (Length: 604)
Name: NF5931_high_8
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_8 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 28638050 - 28637468
Alignment:
| Q |
1 |
ttatgttaatctttttctattacttcccacttatagtatagctttatggcgaagataatttaagtgcaaattatctcttcatatctatgagtgctaccta |
100 |
Q |
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| T |
28638050 |
ttatgttaatctttttctattacttcccacttatagtatagctttatggtgaagataatttaattgcaaattatctcttcatatctatgagtgctaccta |
28637951 |
T |
|
| Q |
101 |
attttgtcctttacaacagacagaaaattgtgtatcagattttgtgctgctttacacatttcaatttcatcacatggtagtagttaatgtttcattaata |
200 |
Q |
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| T |
28637950 |
attttgtcctttacaacagacagaaaattgtgtatcagatttattgctgctttacacatttca------tcacatggtagtagttaatgtttcattaata |
28637857 |
T |
|
| Q |
201 |
aactactttttgtctccactcaggtgtgaagccatgtccacttatcctcgaacctatgactttatacatgctgattctctctttagcctctatgaggaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
28637856 |
aactactttttgtctccactcaggtgtgaagccatgtccacttatcctagaacctatgactttatacatgctgattctctttttaccctctatgaggaca |
28637757 |
T |
|
| Q |
301 |
ggtaaattgtgaaattggttttgccaaattgagaaataataactatttaccagtcatataataactttgtaataatatatgaaactattcaatgtgtgac |
400 |
Q |
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| T |
28637756 |
ggtaaattgtgaaattggttttgcctaattgagaaataa---ctattta--aat--tataataactttgtaataatatatgaaattattcaatgtgtgac |
28637664 |
T |
|
| Q |
401 |
agatgtaatatagaggacattcttcttgagatggataggattttaaggccacaagggagtgtgatattgcgtgatgatgtggatgtgttgttgaaggtaa |
500 |
Q |
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| T |
28637663 |
agatgtaatatagaggacattcttgttgagatggataggattttaaggccacaagggagtgtgatattgcgtgatgatgtggatgtgttgttgaaggtaa |
28637564 |
T |
|
| Q |
501 |
aaagatttgcagatgcaatgcaatgggatgctagaattgcataccattaaaagggaccacaccaaagagaagagatacttgtagcagtcaagcagt |
596 |
Q |
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| T |
28637563 |
aaagatttgcagatgcaatgcaatgggatgctagaattgcagaccatgaaaagggaccacaccaaagagaaaagatacttgtagcagtcaagcagt |
28637468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 391 - 594
Target Start/End: Complemental strand, 12400042 - 12399839
Alignment:
| Q |
391 |
aatgtgtgacagatgtaatatagaggacattcttcttgagatggataggattttaaggccacaagggagtgtgatattgcgtgatgatgtggatgtgttg |
490 |
Q |
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| T |
12400042 |
aatgtgtcacagatgtagtatggagaacattcttctggagatggaccggattttgcgtccgcaaggtagtgtaattttgcgcgacaatgtagatgtgttg |
12399943 |
T |
|
| Q |
491 |
ttgaaggtaaaaagatttgcagatgcaatgcaatgggatgctagaattgcataccattaaaagggaccacaccaaagagaagagatacttgtagcagtca |
590 |
Q |
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| T |
12399942 |
acgaaggtgaagagcattgcagatgaaatgcagtgggatgcaaaaattagagaccatgaagaaggaccttatcaaaaagaaaagatacttgtagcagtca |
12399843 |
T |
|
| Q |
591 |
agca |
594 |
Q |
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|||| |
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| T |
12399842 |
agca |
12399839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 12400269 - 12400211
Alignment:
| Q |
219 |
ctcaggtgtgaagccatgtccacttatcctcgaacctatgactttatacatgctgattc |
277 |
Q |
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| T |
12400269 |
ctcaggtgtgaagccatgtctacttacccacgaacttatgacttcatacatggtgattc |
12400211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 64147 - 64064
Alignment:
| Q |
221 |
caggtgtgaagccatgtccacttatcctcgaacctatgactttatacatgctgattctctctttagcctctatgaggacaggta |
304 |
Q |
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|||||||||||| ||||| ||||||||| |||| |||||| | || |||||||||||| | |||||||| ||| | |||||||| |
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| T |
64147 |
caggtgtgaagctatgtctacttatcctagaacttatgacctaattcatgctgattctgtgtttagcctttataatgacaggta |
64064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 45784819 - 45784764
Alignment:
| Q |
222 |
aggtgtgaagccatgtccacttatcctcgaacctatgactttatacatgctgattc |
277 |
Q |
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| T |
45784819 |
aggtgtgaagcaatgtccacttatccaagaacctatgatttaattcatgctgattc |
45784764 |
T |
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