View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_84 (Length: 237)
Name: NF5931_high_84
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_84 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25538676 - 25538897
Alignment:
| Q |
1 |
caaagttcccaacaaagtacatatacatgaaattgaaattgagaggtcatgaatagaaaaagcattaaatcaggcatctcaattttaaaaaatgagacac |
100 |
Q |
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| T |
25538676 |
caaagttcccaacaaagtacatatacatgaaattgaaattgagaggtcatgaatacaaaaagcattaaatcaggcatctcaattttaaaaaatgagacac |
25538775 |
T |
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| Q |
101 |
attataaggcatcatgactatatatgcaacaaagtcccatacaaaaaccacttatttctaaaactctgcagaatattagaagaataaagtttcaaacttt |
200 |
Q |
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| T |
25538776 |
attataaggcatcatgactatatatgcaacaaagtcccatacaaaaaccacttatttctaaaactctgcagaatattagaagaataaagtttcaaacttt |
25538875 |
T |
|
| Q |
201 |
gcaaaccctttgatgagacaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
25538876 |
gcaaaccctttgatgagacaaa |
25538897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 25524023 - 25524100
Alignment:
| Q |
39 |
ttgagaggtcatgaatagaaaaagcattaaatcaggcatctcaattttaaaaaatgagacacattataaggcatcatgactatatatg |
126 |
Q |
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| T |
25524023 |
ttgagaggtcatgaatagcaaaagcattaaatca---------attttaaaa-atgagacacattataaggcatcatgattatatatg |
25524100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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