View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_87 (Length: 232)
Name: NF5931_high_87
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_87 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 49936895 - 49937090
Alignment:
| Q |
21 |
taccagccaaaaaacagcatatattattccccttacacaaccattatataatgcctcgaccaagtcataattcaggaagaactgaacagaaaagcagagt |
120 |
Q |
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| T |
49936895 |
taccagccaaaaaacagcatatattattccccttacacaaccattatataatgcctcgaccaagtcataattcaggaagaactgaacagaaaagcagagt |
49936994 |
T |
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| Q |
121 |
tgaagagataaaaagcaacaaagtcgatgtaatgtcaaaattcgcacactgcgatggggcaaaccttgtctaatcttccctaaggtcaacctcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49936995 |
tgaagagataaaaagcaacaaagtcgatgtaatgtcaaaattcgcacactgcgatggggcaaaccttgtctaatcttccctaaggtcaacctcatt |
49937090 |
T |
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