View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_high_91 (Length: 225)
Name: NF5931_high_91
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_high_91 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 17773415 - 17773602
Alignment:
| Q |
19 |
tatataacgttagttatagcctaacacatgttaaagcatctaatactcattgcctcattgtgtcatatggttcttggatgtcaaatgtgttcatatatgt |
118 |
Q |
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| T |
17773415 |
tatataacgttagttatagcctaacacatgttaaagcatctaacactcattgcctcattatgtcatatggttcttggatgtcaaatgtgttcatatatgt |
17773514 |
T |
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| Q |
119 |
gtagaaatctttcttttttagtggcaaaacnnnnnnncaagatgcttgactcgattcaaattttcttgtatcaaccattctctctgcc |
206 |
Q |
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| T |
17773515 |
gtagaaatctttcttttttagtggcaaaattttttttctagatgcttgactcgattcaaattttcttgtatcaaccattctctctgcc |
17773602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 21516890 - 21516802
Alignment:
| Q |
19 |
tatataacgttagttatagcctaacacatgttaaagcatctaatactcattgcctcattgtgtcatatggttcttggatgtcaaatgtg |
107 |
Q |
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| T |
21516890 |
tatataatgttatttatagcctagaaaatgttaaagcacctagcaatcattgcctcattgtgtcatatggttcttagatgtcaagtgtg |
21516802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 15486870 - 15486790
Alignment:
| Q |
27 |
gttagttatagcctaacacatgttaaagcatctaatactcattgcctcattgtgtcatatggttcttggatgtcaaatgtg |
107 |
Q |
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| T |
15486870 |
gttagttatagcctaaaaactgttaacgcacctagcaattattgcctcattgtgtcataaggttcttagatgtcaattgtg |
15486790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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