View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_10 (Length: 572)

Name: NF5931_low_10
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_10
NF5931_low_10
[»] chr1 (5 HSPs)
chr1 (107-394)||(4809169-4809454)
chr1 (486-562)||(4809558-4809634)
chr1 (500-562)||(36619486-36619548)
chr1 (291-342)||(34501406-34501457)
chr1 (437-481)||(4809497-4809541)
[»] chr2 (4 HSPs)
chr2 (264-349)||(36995566-36995651)
chr2 (482-562)||(36776666-36776746)
chr2 (305-349)||(36776912-36776956)
chr2 (500-562)||(36995840-36995902)
[»] chr6 (1 HSPs)
chr6 (482-562)||(6086895-6086975)
[»] chr8 (6 HSPs)
chr8 (264-349)||(8865868-8865952)
chr8 (482-562)||(8866070-8866150)
chr8 (482-550)||(776506-776574)
chr8 (482-550)||(782160-782228)
chr8 (267-349)||(8566635-8566717)
chr8 (292-349)||(11920771-11920828)
[»] chr3 (3 HSPs)
chr3 (268-349)||(47924520-47924601)
chr3 (500-548)||(47923266-47923314)
chr3 (482-546)||(53593241-53593305)
[»] chr4 (2 HSPs)
chr4 (482-549)||(28627344-28627411)
chr4 (264-349)||(28627095-28627180)
[»] chr5 (2 HSPs)
chr5 (264-342)||(36193119-36193197)
chr5 (491-550)||(16948333-16948392)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 107 - 394
Target Start/End: Original strand, 4809169 - 4809454
Alignment:
Q  107 taatcaaacatcaaaataataatttgataaacttacaggtcatttatcctccaaaatgtttgtaaaaagtatacatcacannnnnnngttggacgggatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  4809169 taatcaaacatcaaaataataatttgataaacttacaggtcatttatcctccaaaatgtttgtaaaaagtatacatcacattttttt-ttggacgggatg 4809267  T
Q  207 gatattaactaccaagttactcataatcatatctgcgcattttagtgcaccggcggaagccagaaattttgcaaagcctaggtaaaatattttcataata 306  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  4809268 gatattaactactaagttactcataatcatatctgcacattttagtgcaccggcgga-gccagaaattttgcaaggcctaggtaaaatattttcataata 4809366  T
Q  307 tatatcaaacagttttaaaataatagcaaaattgtgaattggtatattaacatgaagaaccatggttcaaatccctacatgacctcta 394  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  4809367 tatattaaacagttttaaaataatagcaaaattgtgaattggtatattaacatggagaaccgtggttcaaatccctacatgacctcta 4809454  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 486 - 562
Target Start/End: Original strand, 4809558 - 4809634
Alignment:
Q  486 caacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgcaatgacacctatg 562  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  4809558 caacacaatgtaatatatgatatattatggataatatgataattataggtacgttgaggactgcagtggcacctatg 4809634  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 36619486 - 36619548
Alignment:
Q  500 atatgatatattacggataatatgataataataggtacgttgaggactgcaatgacacctatg 562  Q
    ||||||||| ||| ||||||||||||||| ||||| |||||||||||||   |||||||||||    
T  36619486 atatgatatgttatggataatatgataattataggcacgttgaggactgttgtgacacctatg 36619548  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 34501457 - 34501406
Alignment:
Q  291 aaatattttcataatatatatcaaacagttttaaaataatagcaaaattgtg 342  Q
    ||||||||||| ||||||||| |||||||||||| ||| || ||||||||||    
T  34501457 aaatattttcagaatatatattaaacagttttaagatactaacaaaattgtg 34501406  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 481
Target Start/End: Original strand, 4809497 - 4809541
Alignment:
Q  437 ggagagttaccgcagatcgaacacacaccataacaaggtcaggta 481  Q
    ||||||||||| | |||| ||| ||||||||||||||||||||||    
T  4809497 ggagagttaccacggatcaaacccacaccataacaaggtcaggta 4809541  T

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Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 36995566 - 36995651
Alignment:
Q  264 agccagaaattttgcaaagcctaggtaaaatattttcataatatatatcaaacagttttaaaataatagcaaaattgtgaattggt 349  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36995566 agccagaaattttgcagagcctgggcaaaatattttcataatatatattaaacagttttaaaacaatagcaaaattgtgaattggt 36995651  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 562
Target Start/End: Complemental strand, 36776746 - 36776666
Alignment:
Q  482 actgcaacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgcaatgacacctatg 562  Q
    |||||||||| |||||| |||||||||| |   |||||||||||| | |||||||| |||||||||||| || ||||||||    
T  36776746 actgcaacaccatgtaacatatgatatactttagataatatgatagttataggtacattgaggactgcagtggcacctatg 36776666  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 36776956 - 36776912
Alignment:
Q  305 tatatatcaaacagttttaaaataatagcaaaattgtgaattggt 349  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||    
T  36776956 tatatattaaacagttttaaaatattagcaaaactgtgaattggt 36776912  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 36995840 - 36995902
Alignment:
Q  500 atatgatatattacggataatatgataataataggtacgttgaggactgcaatgacacctatg 562  Q
    ||||||||| ||| | ||||||||||||| ||||| ||||||||||||||  || ||||||||    
T  36995840 atatgatatgttatgcataatatgataattataggcacgttgaggactgctgtggcacctatg 36995902  T

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Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 482 - 562
Target Start/End: Complemental strand, 6086975 - 6086895
Alignment:
Q  482 actgcaacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgcaatgacacctatg 562  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  6086975 actgcaacacaatgtaacatatgatatattatggataatatgataattataggtacgttgaggactgcagtggcacctatg 6086895  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 8865868 - 8865952
Alignment:
Q  264 agccagaaattttgcaaagcctaggtaaaatattttcataatatatatcaaacagttttaaaataatagcaaaattgtgaattggt 349  Q
    ||||||||||||| |||||||| || |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  8865868 agccagaaatttttcaaagcctgggcaaaatattttcagaatatatattaaacag-tttaaaataatagcaaaattgtgaattggt 8865952  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 482 - 562
Target Start/End: Original strand, 8866070 - 8866150
Alignment:
Q  482 actgcaacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgcaatgacacctatg 562  Q
    ||||||||||||||||| |||| |||| ||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  8866070 actgcaacacaatgtaacatattatatgttatggataatatgataattataggtacgttgaggactgcagtgacatctatg 8866150  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 776506 - 776574
Alignment:
Q  482 actgcaacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgca 550  Q
    |||||||||| |||||| ||||||||||||| ||||||||| |||||  |||||| |||||||| ||||    
T  776506 actgcaacaccatgtaacatatgatatattatggataatattataattgtaggtaagttgaggattgca 776574  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 782160 - 782228
Alignment:
Q  482 actgcaacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgca 550  Q
    |||||||||| |||||| ||||||||||||| ||||||||| |||||  |||||| |||||||| ||||    
T  782160 actgcaacaccatgtaacatatgatatattatggataatattataattgtaggtaagttgaggattgca 782228  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 8566635 - 8566717
Alignment:
Q  267 cagaaattttgcaaagcctaggtaaaatattttcataatatatatcaaacagttttaaaataatagcaaaattgtgaattggt 349  Q
    ||||||||||||||||||| || |||| | ||||| ||||| ||| ||||||||||| |||| ||   |||||||||||||||    
T  8566635 cagaaattttgcaaagcctgggcaaaaaagtttcagaatatttattaaacagttttataatattattgaaattgtgaattggt 8566717  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 11920771 - 11920828
Alignment:
Q  292 aatattttcataatatatatcaaacagttttaaaataatagcaaaattgtgaattggt 349  Q
    |||||||| | ||||||||| ||||||||||| || |||| |||||||||||||||||    
T  11920771 aatatttttagaatatatattaaacagttttacaagaataacaaaattgtgaattggt 11920828  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 268 - 349
Target Start/End: Complemental strand, 47924601 - 47924520
Alignment:
Q  268 agaaattttgcaaagcctaggtaaaatattttcataatatatatcaaacagttttaaaataatagcaaaattgtgaattggt 349  Q
    |||||||||||| || || || |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  47924601 agaaattttgcagagtctgggcaaaatattttcagaatatatattaaacaattttaaaataatagcaaaattgtgaattggt 47924520  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 47923314 - 47923266
Alignment:
Q  500 atatgatatattacggataatatgataataataggtacgttgaggactg 548  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  47923314 atatgatatgttatggataatatgataattataggtacgttgaggactg 47923266  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 546
Target Start/End: Complemental strand, 53593305 - 53593241
Alignment:
Q  482 actgcaacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggac 546  Q
    |||||||||  |||||| |||  |||||||| ||||||||| ||||| |||||||||||||||||    
T  53593305 actgcaacaacatgtaacatacaatatattatggataatatcataattataggtacgttgaggac 53593241  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 482 - 549
Target Start/End: Original strand, 28627344 - 28627411
Alignment:
Q  482 actgcaacacaatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgc 549  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  28627344 actgcaacacaatgtaacatatgatatgtgacggataatatgataattataggtacgttgaggactgc 28627411  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 349
Target Start/End: Original strand, 28627095 - 28627180
Alignment:
Q  264 agccagaaattttgcaaagcctaggtaaaatattttcataatatatatcaaacagttttaaaataatagcaaaattgtgaattggt 349  Q
    |||||||||| |||   ||||| || ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  28627095 agccagaaatattgttgagcctgggcaaaatatttccagaatatatattaaacagttttaaaataatagcaaaattgtgaattggt 28627180  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 36193197 - 36193119
Alignment:
Q  264 agccagaaattttgcaaagcctaggtaaaatattttcataatatatatcaaacagttttaaaataatagcaaaattgtg 342  Q
    |||||| ||||||| | || || | |||||||||||||||||||||||  ||||||||||| ||| ||| |||||||||    
T  36193197 agccaggaattttgtagagtctggataaaatattttcataatatatattcaacagttttaagatactagtaaaattgtg 36193119  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 16948333 - 16948392
Alignment:
Q  491 caatgtaatatatgatatattacggataatatgataataataggtacgttgaggactgca 550  Q
    |||||||| |||||||| |||| ||||||||||||||| |||||||  |||||| |||||    
T  16948333 caatgtaacatatgataaattatggataatatgataattataggtaacttgagggctgca 16948392  T

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