View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_11 (Length: 561)

Name: NF5931_low_11
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_11
NF5931_low_11
[»] chr1 (10 HSPs)
chr1 (54-258)||(33884501-33884707)
chr1 (54-258)||(33959545-33959751)
chr1 (350-431)||(33884273-33884354)
chr1 (350-431)||(33959898-33959979)
chr1 (475-551)||(33883957-33884036)
chr1 (475-551)||(33960218-33960297)
chr1 (20-73)||(33884707-33884760)
chr1 (20-73)||(33959492-33959545)
chr1 (427-459)||(33884052-33884084)
chr1 (427-459)||(33960168-33960200)
[»] chr7 (3 HSPs)
chr7 (19-106)||(3347094-3347182)
chr7 (105-174)||(45560273-45560344)
chr7 (132-171)||(3347014-3347053)
[»] chr3 (1 HSPs)
chr3 (105-172)||(40699690-40699759)
[»] chr8 (1 HSPs)
chr8 (105-164)||(27924380-27924441)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 54 - 258
Target Start/End: Complemental strand, 33884707 - 33884501
Alignment:
Q  54 tatcctaatttcaatttcttttcttgtcattaatcagccatatccaaaacctaaaatctcaattgaaatca--gttattcgtgtaactaatcccaaattc 151  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  33884707 tatcctaatttcaatttcttttcttgtcatgaatcagccatatccaaaacctaaaatcacaattgaaatcacagttattcgtgtaactaatcccaaattc 33884608  T
Q  152 aattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcaaaagtgatatgaaagtagaaaacgagagaagaacagaggaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  33884607 aattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcataagtgatatgaacgtaggaaacgagagaagaacagaggaa 33884508  T
Q  252 gatggtg 258  Q
    |||||||    
T  33884507 gatggtg 33884501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 54 - 258
Target Start/End: Original strand, 33959545 - 33959751
Alignment:
Q  54 tatcctaatttcaatttcttttcttgtcattaatcagccatatccaaaacctaaaatctcaattgaaatca--gttattcgtgtaactaatcccaaattc 151  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  33959545 tatcctaatttcaatttcttttcttgtcatgaatcagccatatccaaaacctaaaatcacaattgaaatcacagttattcgtgtaactaatcccaaattc 33959644  T
Q  152 aattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcaaaagtgatatgaaagtagaaaacgagagaagaacagaggaa 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  33959645 aattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcataagtgatatgaacgtaggaaacgagagaagaacagaggaa 33959744  T
Q  252 gatggtg 258  Q
    |||||||    
T  33959745 gatggtg 33959751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 350 - 431
Target Start/End: Complemental strand, 33884354 - 33884273
Alignment:
Q  350 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcactaatat 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33884354 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcaccaatat 33884273  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 33959898 - 33959979
Alignment:
Q  350 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcactaatat 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33959898 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcaccaatat 33959979  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 475 - 551
Target Start/End: Complemental strand, 33884036 - 33883957
Alignment:
Q  475 ctaaaatggatgcactct---atctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccaccatctgtg 551  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33884036 ctaaaatggatgcactcttatatctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccgccatctgtg 33883957  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 475 - 551
Target Start/End: Original strand, 33960218 - 33960297
Alignment:
Q  475 ctaaaatggatgcactct---atctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccaccatctgtg 551  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33960218 ctaaaatggatgcactcttatatctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccgccatctgtg 33960297  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 33884760 - 33884707
Alignment:
Q  20 atggtggttgctaatgttatgtgccaagtattaatatcctaatttcaatttctt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33884760 atggtggttgctaatgttatgtgccaagtattaatatcctaatttcaatttctt 33884707  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 33959492 - 33959545
Alignment:
Q  20 atggtggttgctaatgttatgtgccaagtattaatatcctaatttcaatttctt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33959492 atggtggttgctaatgttatgtgccaagtattaatatcctaatttcaatttctt 33959545  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 33884084 - 33884052
Alignment:
Q  427 aatatcaatgttttaagaaaaataacctgttgt 459  Q
    ||||| |||||||||||||||||||||||||||    
T  33884084 aatattaatgttttaagaaaaataacctgttgt 33884052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 459
Target Start/End: Original strand, 33960168 - 33960200
Alignment:
Q  427 aatatcaatgttttaagaaaaataacctgttgt 459  Q
    ||||| |||||||||||||||||||||||||||    
T  33960168 aatattaatgttttaagaaaaataacctgttgt 33960200  T

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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 3347182 - 3347094
Alignment:
Q  19 tatggtggttgctaatgttatgtgccaag-tattaatatcctaatttcaatttcttttcttgtcattaatcagccatatccaaaaccta 106  Q
    |||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||  |  |||| ||||||||||||||||    
T  3347182 tatggtagttgctattgttatgtgccaagatattagtatcctaatttcaatttcttttcttgttttgtatcaaccatatccaaaaccta 3347094  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 45560344 - 45560273
Alignment:
Q  105 taaaatctcaattgaaatc--agttattcgtgtaactaatcccaaattcaattttaattcatatcacttttt 174  Q
    ||||||||||| || ||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  45560344 taaaatctcaactggaatcgtagttattcttataactaatcccaaattcaattttaattcatatcacttttt 45560273  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 3347053 - 3347014
Alignment:
Q  132 gtgtaactaatcccaaattcaattttaattcatatcactt 171  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3347053 gtgtaactaatcccaaattcaattttaattcatatcactt 3347014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 40699759 - 40699690
Alignment:
Q  105 taaaatctcaattgaaatca--gttattcgtgtaactaatcccaaattcaattttaattcatatcacttt 172  Q
    ||||||| |||||| |||||  ||||||  | |||||||||||||||||||||||||| |||||||||||    
T  40699759 taaaatcgcaattggaatcacagttattattataactaatcccaaattcaattttaatacatatcacttt 40699690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 27924441 - 27924380
Alignment:
Q  105 taaaatctcaattgaaatc--agttattcgtgtaactaatcccaaattcaattttaattcat 164  Q
    |||| ||||||||| ||||  ||||||| ||||||||||| |||||||||||||||| ||||    
T  27924441 taaattctcaattggaatcttagttatttgtgtaactaattccaaattcaattttaactcat 27924380  T

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