View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_low_12 (Length: 546)
Name: NF5931_low_12
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 45341946 - 45342084
Alignment:
| Q |
23 |
aatcccaatcctgtagtaacggtacgcataacgacaaaaacaaacaaatgttcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatag |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45341946 |
aatcccaatcctgtaataacggtacgcataacgacaaaaacaaacaaatgttcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatag |
45342045 |
T |
|
| Q |
123 |
cataacaacaccactacactgaaacaacgattcaatcat |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342046 |
cataacaacaccactacactgaaacaacgattcaatcat |
45342084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 45342337 - 45342415
Alignment:
| Q |
378 |
tgtgtcataatatatatatcacatatcacatcatgtgata---gtgaaaatgaaaacaaagaataaccgtcgattttgt |
453 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342337 |
tgtgtcataatatatatatcacacatcacatcatgtgatattagtgaaaatgaaaacaaagaataaccgtcgattttgt |
45342415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 45342116 - 45342160
Alignment:
| Q |
156 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342116 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttg |
45342160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 45342214 - 45342272
Alignment:
| Q |
254 |
gtgatgacggtgaaaaggacgataacacgttgcggttccatgtgaaggtttcttagagta |
313 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45342214 |
gtgatgacggtgacaatgacgacaacacgttgcggttccatgtgaagg-ttcttagagta |
45342272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University