View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_13 (Length: 522)
Name: NF5931_low_13
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 506
Target Start/End: Complemental strand, 42462024 - 42461519
Alignment:
| Q |
7 |
tcgaagaaaattgtgaccagtataacaaagagaactgatacttaatatcttaaacttcataaaatggaacctgaaaaacaaattttgtttcatgaactgc |
106 |
Q |
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| T |
42462024 |
tcgaaaaaaattgtgaccagtatagcaaagagaactgatacttaatatcttaaacttcataaaatggaacctgaaaaacaaattttgtttcatgaactgc |
42461925 |
T |
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| Q |
107 |
agtaaccggttgatctaacctttaatttggtccaaatgatatactac------atctaatttcctttagttatcacttcatgaaatccaattataactaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
42461924 |
agtaaccggttgatctaacctttaatttggtccaaatgatatactactactacatctaatttcctttagttatcacttcatgaaatccatttataactta |
42461825 |
T |
|
| Q |
201 |
tcagtgacacgatgacgacttcacaccacaaaacacaaaagacttaatgaactgaaaataggcaaattgcatacctttagattcaatttcaacttatcat |
300 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42461824 |
tcagtgacacaatgacgacttcgcaccacaaaacacaaaagacttaatgaactgaaaataggcaaattgcatacctttagattcaatttcaacttatcat |
42461725 |
T |
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| Q |
301 |
actctttgtcagtcaaaattggatttccagaaacataagccatagaagcttcaagaaatttttgttcatccgaacctacacaacagtaattcaacaaaga |
400 |
Q |
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| T |
42461724 |
actctttgtcagtcaaaattggatttccagaaacataagccatagaagcttcaagaaatttttgttcatccgaacctacacaacagtaattcaacaaaga |
42461625 |
T |
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| Q |
401 |
catacaaaaatatagacttacatattaacaccaatccattattcatatatataagagtaataacagagaaaattacaccatacttagcatgacaacactg |
500 |
Q |
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| T |
42461624 |
cttacaaaaatatagacttacatattaacaccaatccattattcatatatataagagtaataacagagaaaattacaccatacttagcatgacaacactg |
42461525 |
T |
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| Q |
501 |
cttcct |
506 |
Q |
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|||||| |
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| T |
42461524 |
cttcct |
42461519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 364
Target Start/End: Original strand, 3188503 - 3188603
Alignment:
| Q |
264 |
aaattgcatacctttagattcaatttcaacttatcatactctttgtcagtcaaaattggatttccagaaacataagccatagaagcttcaagaaattttt |
363 |
Q |
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|||| ||| |||||||| |||| ||| || | |||| ||||||| ||| ||| | ||| |||||||| |||||||| ||||| ||||| |||||||||| |
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| T |
3188503 |
aaatagcaaacctttagcttcagttttaattcatcaaactctttatcactcatgagtggttttccagacacataagcaatagatgcttccagaaattttt |
3188602 |
T |
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| Q |
364 |
g |
364 |
Q |
| |
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| T |
3188603 |
g |
3188603 |
T |
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