View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_16 (Length: 507)

Name: NF5931_low_16
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_16
NF5931_low_16
[»] chr6 (1 HSPs)
chr6 (13-474)||(15138186-15138647)
[»] chr3 (4 HSPs)
chr3 (13-485)||(20735842-20736315)
chr3 (207-480)||(20743386-20743660)
chr3 (13-211)||(20745807-20746005)
chr3 (386-442)||(17665251-17665307)
[»] chr4 (4 HSPs)
chr4 (272-460)||(3733204-3733392)
chr4 (112-219)||(8770318-8770426)
chr4 (15-90)||(8770188-8770263)
chr4 (24-95)||(3734800-3734871)
[»] chr8 (1 HSPs)
chr8 (26-82)||(23441020-23441076)


Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 15138647 - 15138186
Alignment:
Q  13 agcagagagattgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatcaggaatgaatcagaaccgactt 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||| |    
T  15138647 agcagagagattgaggcacgtgaacacaactcaaacccggaatgatccggatttgacttccaacttcaaacccagatcaggaatgaagcaaaatcgacct 15138548  T
Q  113 ccggtattgaatcacgaacaacccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaagc 212  Q
    |||||||||||||||||||||| ||||||| || |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15138547 ccggtattgaatcacgaacaactcataaaagagaaaacaaccaccacgagaaaggcagcgccagacttcctaggttcaaaaccatcgttcggacacaagc 15138448  T
Q  213 acgagctgcaacaccgtcgatatgaacggaggcagtggctaaagacccaacgaccgaagcaacacaaccctcacatctagcaaggagtcaaccatcaaat 312  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||    
T  15138447 acgagctgcaacatcgtcgatatgaacggcggcagtggctaaagacccaacgaccgaagcaacacaaccctcacctttggcaaggagtcaaccatcaaat 15138348  T
Q  313 ttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaagggtatgacggtggcgcggagaaacactctcctcgcaccacc 412  Q
    |||||||||||||| |||||||||||||||||||||||||||||| | | ||||| ||| |||||| |||||||||||||||||||||||||||||||||    
T  15138347 ttgcgaacaacgacggaatcgacgagcatgacagacaaaaggagcgccataggaagaagtgtatgatggtggcgcggagaaacactctcctcgcaccacc 15138248  T
Q  413 atcttctagatctacatcgtggtggctgagattggaaaaggaaggagcagcagctaaggttc 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  15138247 atcttctagatctacatcgtggtggctgagattggaaaaggaaggagtggcagctaaggttc 15138186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 485
Target Start/End: Complemental strand, 20736315 - 20735842
Alignment:
Q  13 agcagagagattgaggcacatgaacacaactcaaacccggaatgatccgaa-tttgacttccaacttcaaacccagatcaggaatgaatcagaaccgact 111  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||     
T  20736315 agcagagagattgaggcacacgaacacaactcaaacccagaatgatccgaaatttgacttccaacttcaaacctagatcaggaatgaagcagaatcgacc 20736216  T
Q  112 tccggtattgaatcacgaacaacccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaag 211  Q
    ||| ||| ||| |||| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  20736215 tcccgtaatga-tcacaaacaacccatagaagagccaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaacatcgttcagacacaag 20736117  T
Q  212 cacgagctgcaacaccgtcgatatgaacggaggcagtggctaaagacccaacgaccgaagcaacacaaccctcacatctagcaaggagtcaaccatcaaa 311  Q
    |||||| ||||||||  ||  |||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||       
T  20736116 cacgagatgcaacactttcattatgaacggcagcagtggctaaagacccaacgaccgaaggaacacaaccctcacctctggcaaggagccaaccatcttt 20736017  T
Q  312 tttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaagggtatgacggtggcgcggagaaacactc-tcctcgcacca 410  Q
    | || |||| ||||| ||||||||||||||||||||| |||||||| | | | ||| |||||| ||||||||||||| ||||||| || | |||||||||    
T  20736016 tctgtgaacgacgacagaatcgacgagcatgacagacgaaaggagcgccagatgaagaagggtgtgacggtggcgcgaagaaacattctttctcgcacca 20735917  T
Q  411 ccatcttctagatctacatcgtggtggctgagattggaaaaggaaggagcagcagctaaggttccggggcggcgg 485  Q
     ||||| ||||||||||||| |||||| ||||||||||||||||| ||||  || ||||||||| ||||| ||||    
T  20735916 acatctcctagatctacatcatggtggttgagattggaaaaggaaagagcgacatctaaggttcaggggcagcgg 20735842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 207 - 480
Target Start/End: Complemental strand, 20743660 - 20743386
Alignment:
Q  207 acaagcacgagctgcaacaccgtcgatatgaacggaggcagtggctaaagacccaacgaccgaagcaacacaaccctcacatctagcaaggagtcaacca 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||  |||||||| ||||||    
T  20743660 acaagcacgagctgcaacaccgtcgatatgaacggcggcagtggctaaagatccaacgaccgaagcaacacaacccttacctcacgcaaggagccaacca 20743561  T
Q  307 tcaaatttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaagggtatgacggtggcgcggagaaacactc-tcctcg 405  Q
    ||   |  |||||| ||||| |||||||||||||||| |||| |||||||| | | ||||| |||||| ||||||||||||| ||||||| || |||||     
T  20743560 tcttttcggcgaacgacgacggaatcgacgagcatgatagacgaaaggagcgccagaggaagaagggtgtgacggtggcgcgaagaaacattcttcctca 20743461  T
Q  406 caccaccatcttctagatctacatcgtggtggctgagattggaaaaggaaggagcagcagctaaggttccggggc 480  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||  |||||||||||| |||||    
T  20743460 caccaccatctcctagatctacatcatggtgtctgagattggaaaaggaaagagcgacagctaaggttcaggggc 20743386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 20746005 - 20745807
Alignment:
Q  13 agcagagagattgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatcaggaatgaatcagaaccgactt 112  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |    
T  20746005 agcagagaaattgaggcacacgaacacaattcaaacccggaatgatccgaatttgacttccaacttcaaacccagctcaggcatgaagcagaaccgacct 20745906  T
Q  113 ccggtattgaatcacgaacaacccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaag 211  Q
    || ||| |||||||| ||||||||||| || ||| ||||||||||||||||||||| || || ||||||| |||||||||| |||||||| ||||||||    
T  20745905 cccgtaatgaatcacaaacaacccatagaagagccaacaaccaccgtgagaaaggcggcaccagacttcccaggttcaaaaacatcgttcagacacaag 20745807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 17665251 - 17665307
Alignment:
Q  386 gcggagaaacactctcctcgcaccaccatcttctagatctacatcgtggtggctgag 442  Q
    |||||||||  ||||||||||| |||||||| |  ||||||||||||||||| ||||    
T  17665251 gcggagaaaagctctcctcgcatcaccatctcccggatctacatcgtggtggttgag 17665307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 272 - 460
Target Start/End: Complemental strand, 3733392 - 3733204
Alignment:
Q  272 caacacaaccctcacatctagcaaggagtcaaccatcaaatttgcgaacaacgactgaatcgacgagcatgacagacaaaaggagcacaacaggaaaaag 371  Q
    |||||||||||| || ||  |||||||  |||||||||||  ||| ||||||||  |||||||||| || || |||| || ||||| | | ||||  |||    
T  3733392 caacacaaccctaacctccggcaaggaaccaaccatcaaacctgcaaacaacgaaggaatcgacgaacacgaaagacgaagggagcgccaaaggaggaag 3733293  T
Q  372 ggtatgacggtggcgcggagaaacactctcctcgcaccaccatcttctagatctacatcgtggtggctgagattggaaaaggaaggagc 460  Q
    ||| ||||||||| |||||||||  |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  3733292 ggtgtgacggtggtgcggagaaaagctctcctcgcaccaccatctcctaaatctacatcgtggtggctgagattggaaaagggaggagc 3733204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 8770318 - 8770426
Alignment:
Q  112 tccggtattgaatcacgaacaa-cccataaaaaagcaaacaaccaccgtgagaaaggcagcgccggacttcctaggttcaaaaccatcgttcggacacaa 210  Q
    ||||||| |||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||| ||||||||| | ||||||| |||  ||||||||||||    
T  8770318 tccggtagtgaatcacgaacaaacccataaaagagccaacaaccaccgtgagaaaggcggcgtcggacttcccatgttcaaacccaatgttcggacacaa 8770417  T
Q  211 gcacgagct 219  Q
    |||||||||    
T  8770418 gcacgagct 8770426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 8770188 - 8770263
Alignment:
Q  15 cagagagattgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatc 90  Q
    |||||| ||||||||| | || |||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  8770188 cagagatattgaggcataggagcacaactcaaacctagaatgatccggatttgacttccaacttcaaacccagatc 8770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 3734871 - 3734800
Alignment:
Q  24 tgaggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaacccagatcaggaa 95  Q
    |||||||||  || |||| |||||||| |||||||||| ||||||||| |||||||||||||||||| ||||    
T  3734871 tgaggcacaataaaacaattcaaacccagaatgatccggatttgacttacaacttcaaacccagatctggaa 3734800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 23441076 - 23441020
Alignment:
Q  26 aggcacatgaacacaactcaaacccggaatgatccgaatttgacttccaacttcaaa 82  Q
    |||||||  |||||||||||||| | |||||||||||||| |||||| |||||||||    
T  23441076 aggcacaataacacaactcaaactcagaatgatccgaattcgacttcaaacttcaaa 23441020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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