View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_17 (Length: 507)

Name: NF5931_low_17
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_17
NF5931_low_17
[»] chr3 (3 HSPs)
chr3 (10-418)||(3562119-3562526)
chr3 (415-490)||(3561982-3562057)
chr3 (149-236)||(9748856-9748944)
[»] chr5 (5 HSPs)
chr5 (157-212)||(34066064-34066119)
chr5 (143-233)||(22934420-22934512)
chr5 (424-486)||(19462862-19462925)
chr5 (424-486)||(37499461-37499524)
chr5 (178-233)||(21025700-21025757)
[»] chr4 (1 HSPs)
chr4 (423-487)||(35966301-35966365)
[»] chr2 (1 HSPs)
chr2 (143-233)||(23352368-23352460)
[»] chr1 (1 HSPs)
chr1 (166-233)||(30039593-30039661)
[»] chr6 (1 HSPs)
chr6 (161-212)||(17704529-17704580)
[»] chr8 (1 HSPs)
chr8 (445-486)||(31134738-31134779)
[»] chr7 (1 HSPs)
chr7 (149-212)||(7728120-7728181)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 418
Target Start/End: Complemental strand, 3562526 - 3562119
Alignment:
Q  10 gcaaagggatgctggataacatgaacttcattgtaacgcacatatacagagaagggaatcaatgtgccgatagcttgacagcatggggactgaatgctaa 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3562526 gcaaagggatgctggataacatgaacttcattgtaacacacatatacagagaagggaatcaatgtgccgatagcttggcagcatggggactgaatgctaa 3562427  T
Q  110 ttgtttaactgtgtgaacagatgtacccttgtttatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggag 209  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3562426 ttgtttaactgtgtggacagatgtacccttgtttatcagagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggag 3562327  T
Q  210 gttaggtttatgtccccctcctttgtttttccttttgtgtttctcttcttaatatatatattttgaggttgcagctctttgctgtccctctccttttggt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3562326 gttaggtttatgtccccctcctttgtttttccttttgtgtttctcttcttaatatatatattttgaggttgcagctctttgctgtccctctccttttggt 3562227  T
Q  310 tttnnnnnnnntatatataattcatttgaggtcattnnnnnnnnnnnnnnnnncaatgttcttgggcataagtctaatcttaaccatttttgttgcattg 409  Q
    |||        |||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||    
T  3562226 ttt-aaaaaaatatatataattcatttgaggtcattttattattattattattcaatgttcttgggcataagtctaatcttaaccatttttgttgcattg 3562128  T
Q  410 atacaagaa 418  Q
    |||||||||    
T  3562127 atacaagaa 3562119  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 415 - 490
Target Start/End: Complemental strand, 3562057 - 3561982
Alignment:
Q  415 agaaggtataacacactgaatcgaagcgagacaacaccggtgtgcaacattttttatcagtagagtttggttttca 490  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3562057 agaaggtgtaacacactgaatcgaagcgagacaacaccggtgtgcaacattttttatcagtagagtttggttttca 3561982  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 9748944 - 9748856
Alignment:
Q  149 agaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggtttatgtccccctcctttgtt 236  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||  ||| || | |||||||||| ||||||||||    
T  9748944 agaatattatgttaagaatagactaggtatgcctaactttaggtttatcaatttttacaaggcttggttttatgtccctctcctttgtt 9748856  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 34066119 - 34066064
Alignment:
Q  157 atgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt 212  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  34066119 atgttaagaatagacttggtatgcctaattataggtttagcaatttctaggaggtt 34066064  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 22934420 - 22934512
Alignment:
Q  143 tatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt 233  Q
    ||||| ||||| |||||| || ||| | ||||||||||||||||||||||||||||| || ||||||| || ||| |||||||||||||||||    
T  22934420 tatcagagaattttatgtcaaaaatcgtcttggtatgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt 22934512  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 486
Target Start/End: Original strand, 19462862 - 19462925
Alignment:
Q  424 aacacactgaatcgaagcgagacaacaccggtgtgcaaca-ttttttatcagtagagtttggtt 486  Q
    |||||||||||||||||||| ||||||||| || |||||| |||||||||| ||||||||||||    
T  19462862 aacacactgaatcgaagcgaaacaacaccgatgcgcaacatttttttatcaatagagtttggtt 19462925  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 486
Target Start/End: Original strand, 37499461 - 37499524
Alignment:
Q  424 aacacactgaatcgaagcgagacaacaccggtgtgcaaca-ttttttatcagtagagtttggtt 486  Q
    |||||||||||||||||||| ||||||||| || |||| | |||||||||| ||||||||||||    
T  37499461 aacacactgaatcgaagcgaaacaacaccgatgcgcaatatttttttatcaatagagtttggtt 37499524  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 21025757 - 21025700
Alignment:
Q  178 tgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt 233  Q
    |||||||||||||||||||||| || ||||||| || ||| |||||||||||||||||    
T  21025757 tgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt 21025700  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 487
Target Start/End: Complemental strand, 35966365 - 35966301
Alignment:
Q  423 taacacactgaatcgaagcgagacaacaccggtgtgcaacattttttatcagtagagtttggttt 487  Q
    |||||||||||||||||| || |||||||||||  |||||||||||||||| |||||| ||||||    
T  35966365 taacacactgaatcgaagtgaaacaacaccggtacgcaacattttttatcaatagagtctggttt 35966301  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 23352368 - 23352460
Alignment:
Q  143 tatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt 233  Q
    ||||| ||||| |||||| || ||| | ||||||||||||||||||||||||||||| || ||||||| || ||| |||||||||||||||||    
T  23352368 tatcagagaattttatgtcaaaaatcgtcttggtatgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt 23352460  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 30039661 - 30039593
Alignment:
Q  166 atagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggtttatgtccccctccttt 233  Q
    ||||||||||||||||||| |||||||||||||||||||||| || || ||| | ||||||||||||||    
T  30039661 atagacttggtatgcctaactttaggtttatcaacttctaggtggttttggtatctgtccccctccttt 30039593  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 17704529 - 17704580
Alignment:
Q  161 taagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt 212  Q
    |||||||||| || | ||||||||||||||||||||||||||| ||||||||    
T  17704529 taagaatagaattagcatgcctaattttaggtttatcaacttcgaggaggtt 17704580  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 486
Target Start/End: Original strand, 31134738 - 31134779
Alignment:
Q  445 acaacaccggtgtgcaacattttttatcagtagagtttggtt 486  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  31134738 acaacaccggtgcgcaacattttttatcaatagagtttggtt 31134779  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 7728181 - 7728120
Alignment:
Q  149 agaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt 212  Q
    |||||| ||||| ||||||||||||||  ||||||| | |||||||||||| | ||||||||||    
T  7728181 agaatactatgtaaagaatagacttgg--tgcctaactataggtttatcaattcctaggaggtt 7728120  T

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