View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_20 (Length: 472)
Name: NF5931_low_20
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 47654269 - 47653823
Alignment:
| Q |
16 |
cacaattgaccgaattttattaccaaacttcgtttatctattgtttacggttgccgtttaattttcctttcataattggttgttgttctaacagtttaat |
115 |
Q |
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| T |
47654269 |
cacaattgaccgaattttattaccaaactttgtttatctattgtttacggttgccgtttaatttccctttcataattggttgttgttctaacagtttatt |
47654170 |
T |
|
| Q |
116 |
tatgttggagatttatgaagagcgccgaaaataacaacaaaccaatgatctaggattacgagatcaaaaatcacatctccatataaaatctcaatgcatt |
215 |
Q |
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| T |
47654169 |
tatgttggagatttatgaagagcgccgaaaataacaacaaaccaacgatctaggattacgagatcaaaaatcatgtctccatataaaatctcaatgcatt |
47654070 |
T |
|
| Q |
216 |
gggtatatgagtcttctcttgtatatatccgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtcaacaatcttccctcaa |
315 |
Q |
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| T |
47654069 |
gagtatatgagtcttctcttgcatatatctgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtcaacaatcttccctcaa |
47653970 |
T |
|
| Q |
316 |
gtgtggagctatatccaatacttgcatcaccattattaccggcataataacatgtctcctgactacactaacatgaagacttttgtagcaagtccaaaca |
415 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47653969 |
gtgtggacctatatccaatacttgcatcaccattattaccggcataataacatgtcttctgactacactaacatgaagacttttgtagcaagtccaaaca |
47653870 |
T |
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| Q |
416 |
ttgagatattcaatttcgctctctcaccaattaaaacttggcctttg |
462 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
47653869 |
ttgagatattcactttcgctctctcgccaattaaaacttggcctttg |
47653823 |
T |
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