View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_21 (Length: 472)
Name: NF5931_low_21
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 5227341 - 5227800
Alignment:
| Q |
17 |
atataggaccactgactggccaaggatcgaatatttagtatattgtccaataaaaataagcattctgcatcaacattaaattcattgttaaatatgtagt |
116 |
Q |
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| T |
5227341 |
atataggaccactaactggccaaggatcgaatatttagtatattgtccaataaaa-taagcattctgcatcaacattaaattcattgttaaatatgtagt |
5227439 |
T |
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| Q |
117 |
tctgttgacaatgttatgatcgatacagaatgtaattgtagtatagc-----aatgacaaaaggtctgttaatatgctttaaattaagcatttatcgaat |
211 |
Q |
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| T |
5227440 |
tctgttgacaatgttatgatcgatacagaatgtaattgtagtatagcttagcaatgacaaaaggtctgttaatatgctttaaattaagcatttatcgaat |
5227539 |
T |
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| Q |
212 |
taaatttcattttgcattttacatgcacatgtcttaatcaaatccaaaaaagcataacaatgtataattgtaatgtaacatgcaacagccatgtcttaat |
311 |
Q |
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| T |
5227540 |
taaatttcatcttgcattttacatgcacatgtcttaatcaaatccaaaaaagcataacaatgtataattgtaatgtaacatgcaacagccatgtcttaat |
5227639 |
T |
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| Q |
312 |
caatcggtcactgttctgttcttagcttcatgagagtgaagaccaccaactctgagaagatggtgaagacaaattcaattccaacaaacctgattgcttt |
411 |
Q |
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| T |
5227640 |
caatcggtcactgttctgttcttagcttcatgagagtgaagaccaccaactctgagaagatggtgaagacaaattcaattccaacaaacctgattgcttt |
5227739 |
T |
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| Q |
412 |
gtcacaccactactctcctgagattgcacccccttgttccaactagttgagaccacttgat |
472 |
Q |
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| T |
5227740 |
gtcacaccactactctcctgagattgcacccccttgttccaactagttgagaccacttgat |
5227800 |
T |
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