View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_24 (Length: 438)
Name: NF5931_low_24
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 951945 - 952352
Alignment:
| Q |
12 |
catcatcatgctaaattgtacatgatttgtccaacactcaatctatcctttgagattttatttttggtcgtacaaggttcaactgcggggaaaacagaca |
111 |
Q |
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| T |
951945 |
catcatcatgctaaattgtacatgatttgtccaacactcaatctatcctttgagattttattattggtcgtacaaggttcaactgcggggaaaacagaca |
952044 |
T |
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| Q |
112 |
aaccattgcaatccaaattaaactacattgnnnnnnntgtggcaaatgacatacgagaatcacgaacacaataaagctagagcagtaataaacaatttta |
211 |
Q |
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| T |
952045 |
aaccattgcaatccaaattaaactacattgaaaaaaatgtggcaaatggcatacgagaatcacgaacacaataaagctagagcagtaataaacaatttta |
952144 |
T |
|
| Q |
212 |
atcgaaacaaatcttgatacataaatcttaaaaagaaattttaggaagtcaaggaaacaaatatgtagagataaaggttnnnnnnnttgatatataaact |
311 |
Q |
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| T |
952145 |
atcgaaacaaatcttgatacataaatcttaaaaagaaattttaggaagtcaaggaaacaaatatgtagagataaagcttaaaaaaattgatatataaact |
952244 |
T |
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| Q |
312 |
gaaaacataaaacaacttttatttaattttcatattgacttgcacctccttattttcannnnnnngaaagaatattgatgatcacttcttgtgttgctgc |
411 |
Q |
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| T |
952245 |
gaaaacataaaacaact----tttaattttcatattgacctgcacctccttattttcatttttttgaaagaatattgatcatcacttcttgtgttgctgc |
952340 |
T |
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| Q |
412 |
tttcaccatatt |
423 |
Q |
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| T |
952341 |
tttcaccatatt |
952352 |
T |
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