View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_low_26 (Length: 427)
Name: NF5931_low_26
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 35309136 - 35309551
Alignment:
| Q |
1 |
tattaattagttacctatgctacccaattaaattattttacatgaatttaaacatctaccgtcacgtaaaggcgcaattcaaatcatcataattgaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35309136 |
tattaattagttacctatgctacccaattaaattattttacatgaatttaaacatctaccgtcacgtaaaggtgcaattcaaatcatcataattgaattt |
35309235 |
T |
|
| Q |
101 |
cagtgtcgtacactttggaacttcaattgcaagttattaattattttgatgtcacatacattttatcgattggtcgatcaaggattctgtacttgattaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35309236 |
cagtgtcgtacactttggaacttcaattgcaagttattaattattttgatgtcacatacattttatcgattggtcgatcaaggattctgtacttgattaa |
35309335 |
T |
|
| Q |
201 |
tttcttgaaagaccactctctattgtagtttcttacaattatagttaaatgatgtgttacatcatttgtgaaaacgagtttcaattgatacaaacaacag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35309336 |
tttcttgaaagaccactctctattgtagtttcttacaattacagttaaatgatgtgttacatcatttgtgaaaacgagtttcaattgatacaaacaacag |
35309435 |
T |
|
| Q |
301 |
tatttcaggtaaagaaaatggtaaagtactttgaaaggactactcaatagacaaaaaggttgaagggccatctccctttatgcaatgcctgtgatcattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35309436 |
tatttcaggtaaagaaaatggtaaagtactttgaaaggactactcaatagacaaaaaggttgaagggccatctccctttatgcaatgcctgtgatcattt |
35309535 |
T |
|
| Q |
401 |
ttcccaacttatctct |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35309536 |
ttcccaacttatctct |
35309551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University