View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_low_27 (Length: 424)
Name: NF5931_low_27
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 35 - 348
Target Start/End: Original strand, 34662010 - 34662323
Alignment:
| Q |
35 |
agaaaagatcacactaatcaataataattaaaacatctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattct |
134 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34662010 |
agaaaagatcacactaatcattaataattaaaacatctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattct |
34662109 |
T |
|
| Q |
135 |
ccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34662110 |
ccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttct |
34662209 |
T |
|
| Q |
235 |
cgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatctt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34662210 |
cgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatctt |
34662309 |
T |
|
| Q |
335 |
gtaggtttcaacgc |
348 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34662310 |
gtaggtttcaacgc |
34662323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 69 - 348
Target Start/End: Complemental strand, 26833010 - 26832731
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || || ||||||||||| || || |||||||||| |
|
|
| T |
26833010 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
26832911 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26832910 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacc |
26832811 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgc |
348 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26832810 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgc |
26832731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 69 - 346
Target Start/End: Complemental strand, 24307498 - 24307221
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
24307498 |
atctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaattt |
24307399 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || || |
|
|
| T |
24307398 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcc |
24307299 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaac |
346 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
24307298 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaac |
24307221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 69 - 348
Target Start/End: Complemental strand, 26434299 - 26434020
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || || ||||||||||| || || |||||||||| |
|
|
| T |
26434299 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
26434200 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26434199 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacc |
26434100 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgc |
348 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26434099 |
catggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgc |
26434020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 69 - 348
Target Start/End: Complemental strand, 26436079 - 26435800
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||||| ||| ||||||| |||||||| || || ||||||||||| || || |||||||||| |
|
|
| T |
26436079 |
atctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
26435980 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26435979 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacc |
26435880 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgc |
348 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26435879 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgc |
26435800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 69 - 346
Target Start/End: Complemental strand, 23886102 - 23885825
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
23886102 |
atctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaattt |
23886003 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23886002 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc |
23885903 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaac |
346 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
23885902 |
catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaac |
23885825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 69 - 343
Target Start/End: Complemental strand, 23402349 - 23402075
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
23402349 |
atctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaattt |
23402250 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23402249 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc |
23402150 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
343 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23402149 |
catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23402075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 346
Target Start/End: Original strand, 23415713 - 23415989
Alignment:
| Q |
70 |
tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc |
169 |
Q |
| |
|
||||||| || |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
23415713 |
tctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
23415812 |
T |
|
| Q |
170 |
cctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc |
269 |
Q |
| |
|
||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23415813 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23415912 |
T |
|
| Q |
270 |
atggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaac |
346 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
23415913 |
atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaac |
23415989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 70 - 343
Target Start/End: Original strand, 23408544 - 23408817
Alignment:
| Q |
70 |
tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc |
169 |
Q |
| |
|
||||||| || |||||||| || ||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| || || || ||||||||||| |
|
|
| T |
23408544 |
tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttc |
23408643 |
T |
|
| Q |
170 |
cctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc |
269 |
Q |
| |
|
||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23408644 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23408743 |
T |
|
| Q |
270 |
atggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
343 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23408744 |
atcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttc |
23408817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 69 - 343
Target Start/End: Original strand, 23453375 - 23453649
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||| |
|
|
| T |
23453375 |
atctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaattt |
23453474 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23453475 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc |
23453574 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
343 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23453575 |
catggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttc |
23453649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 69 - 346
Target Start/End: Complemental strand, 23869007 - 23868730
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
168 |
Q |
| |
|
||||||||||| || ||||| || |||||||| || || ||||| |||||||| || |||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
23869007 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaattt |
23868908 |
T |
|
| Q |
169 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
268 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || || |
|
|
| T |
23868907 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcc |
23868808 |
T |
|
| Q |
269 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaac |
346 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
23868807 |
catggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaac |
23868730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 23451792 - 23451920
Alignment:
| Q |
126 |
gccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgag |
225 |
Q |
| |
|
|||||||| || || ||||||||||| || || |||||||||||||| ||||| || || ||||||||||| || | ||||||||||| ||||||||| |
|
|
| T |
23451792 |
gccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattcttgag |
23451891 |
T |
|
| Q |
226 |
cgagcttctcgaagatatcattgatgaaa |
254 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |
|
|
| T |
23451892 |
cgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 31632926 - 31632862
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattc |
133 |
Q |
| |
|
|||||||| ||||| || || || ||| |||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
31632926 |
atctaagagcttgtgaatttggtcacaactttggtaccctcacaaacaacatgcttagccaattc |
31632862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 93 - 348
Target Start/End: Complemental strand, 41670651 - 41670396
Alignment:
| Q |
93 |
acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttct |
192 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| | ||| || || |||||||| | |||||||||||| || |||| ||||| || || ||||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
41670552 |
T |
|
| Q |
193 |
tgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaat |
292 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
41670551 |
tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
41670452 |
T |
|
| Q |
293 |
gtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgc |
348 |
Q |
| |
|
|||||| ||||| || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41670451 |
gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacgc |
41670396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 73 - 348
Target Start/End: Complemental strand, 40796040 - 40795765
Alignment:
| Q |
73 |
aagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccct |
172 |
Q |
| |
|
|||| |||||||| || || || |||||||| ||||| || ||||| ||||| || | ||| || |||||||| || | ||||||||||||||| || | |
|
|
| T |
40796040 |
aagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacg |
40795941 |
T |
|
| Q |
173 |
cgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatg |
272 |
Q |
| |
|
|| || || || || |||||||| || | || |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||| |
|
|
| T |
40795940 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccata |
40795841 |
T |
|
| Q |
273 |
gctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgc |
348 |
Q |
| |
|
|| ||||| ||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40795840 |
gccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgc |
40795765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 73 - 348
Target Start/End: Complemental strand, 29391737 - 29391462
Alignment:
| Q |
73 |
aagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccct |
172 |
Q |
| |
|
||||||| ||||| || || ||||| ||||| || || || |||||||| || |||||||| || |||||||| | | ||||| || ||||| ||||| |
|
|
| T |
29391737 |
aagaactcgtaaatttggtaacagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccct |
29391638 |
T |
|
| Q |
173 |
cgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatg |
272 |
Q |
| |
|
||| || |||||||| |||||||| || | || | ||| |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29391637 |
cgacgtaatcgtcggtttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccata |
29391538 |
T |
|
| Q |
273 |
gctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgc |
348 |
Q |
| |
|
|||||| || ||||| || ||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
29391537 |
gctttggaagaaatacctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttcaacgc |
29391462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 33216717 - 33216594
Alignment:
| Q |
72 |
taagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccc |
171 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||||||||| |||||||| || |||||||| ||| |||||||||| || |||||||| ||||||| || |
|
|
| T |
33216717 |
taagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttcc |
33216618 |
T |
|
| Q |
172 |
tcgaagttatcgtcggcttcttgt |
195 |
Q |
| |
|
| ||||| || || |||||||||| |
|
|
| T |
33216617 |
ttgaagtgattgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 45576478 - 45576397
Alignment:
| Q |
69 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcc |
150 |
Q |
| |
|
|||||||| ||||| || || || |||||||||||||||||||| ||| |||||||||||||||| | || |||||||||| |
|
|
| T |
45576478 |
atctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaagcc |
45576397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 108 - 348
Target Start/End: Original strand, 40180312 - 40180552
Alignment:
| Q |
108 |
tcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaa |
207 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| | ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| || | |
|
|
| T |
40180312 |
tcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagcca |
40180411 |
T |
|
| Q |
208 |
gtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttg |
307 |
Q |
| |
|
| || ||||| |||||||| ||||| |||||||| || |||||||||||||| || ||||| || |||||||| | ||| || ||||| ||||| || |
|
|
| T |
40180412 |
aacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctg |
40180511 |
T |
|
| Q |
308 |
tttcagaaccttgaagatgtagatcttgtaggtttcaacgc |
348 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40180512 |
tttcagaaccttgaagatgtatatcttgtaggtttcaacgc |
40180552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
| Q |
72 |
taagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccc |
171 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||||| ||| |||| || |||||||| |||||||||| ||| || ||| |||| |||||||||| |
|
|
| T |
47317554 |
taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc |
47317455 |
T |
|
| Q |
172 |
tcgaagttatcgtcggcttcttgt |
195 |
Q |
| |
|
| ||||| || || |||||||||| |
|
|
| T |
47317454 |
ttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 29684826 - 29684699
Alignment:
| Q |
218 |
ttcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgtttcagaacc |
317 |
Q |
| |
|
|||||||||||| |||| |||||||| || | ||||||||| |||| ||||| ||||| ||||| | ||||||| |||| ||||||||||| |||||| |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
318 |
ttgaagatgtagatcttgtaggtttcaa |
345 |
Q |
| |
|
||||| || || |||||||||||||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttcaa |
29684699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 14715491 - 14715445
Alignment:
| Q |
102 |
gtaccctcagacacagcatgcttagccaattctccaggaagaacaag |
148 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
14715491 |
gtaccctcagacacaacatgcttggccaattctccaggaagaacaag |
14715445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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