View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_3 (Length: 666)
Name: NF5931_low_3
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_3 |
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| [»] scaffold0076 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 33704922 - 33704510
Alignment:
| Q |
19 |
agagttatgtgaactattgttcctatattctatactatactgattcatctaactgaaagagtattaagtccatgtttagtgctatcctatcagtggcttc |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33704922 |
agagttatgtgaactattgttcctatattctacactatactgattcatctaactgaaagagtattaagtccatgtttagtgctatcctatcagtggcttc |
33704823 |
T |
|
| Q |
119 |
ttggtaatggttttggcatgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccacacagttccatcacagtta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33704822 |
ttggtaatggttttggcatgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccacacagttccatcacagtta |
33704723 |
T |
|
| Q |
219 |
aaagccatgaaacctgctggaggttgttagttccttcaacaatttacgggatctccaccttttatgttgatctcgtatgttactaccgttacaataagct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
33704722 |
aaagccatgaaacctgctggaggttgttagttccttcaacaatttacgggatctccaccttttatgttgatcacttatgttactaccgttacaataagct |
33704623 |
T |
|
| Q |
319 |
agtccttttaatcaaatttctgtataaacgttcacgtgagtaagagagacgcacacatggataactac-------gccatgtgggcattgtagacagagt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33704622 |
agtccttttaatcaaatttctgtataaacgttcacgtgagtaagagagacgcacacatggataactacggggagtgccatgtgggcattgtagacagagt |
33704523 |
T |
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| Q |
412 |
cagggacggatcc |
424 |
Q |
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||||||||||||| |
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| T |
33704522 |
cagggacggatcc |
33704510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 33715355 - 33715311
Alignment:
| Q |
137 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaa |
181 |
Q |
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| T |
33715355 |
tgaaattaccttcactaccgcgtatgacaccaccacagccagcaa |
33715311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 488
Target Start/End: Complemental strand, 21137537 - 21137494
Alignment:
| Q |
445 |
gaaggaaaagaaagccttgaaattaccttcactattgcgtatga |
488 |
Q |
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| T |
21137537 |
gaaggaaaagacagccatgaaattaccttcacaattgcgtatga |
21137494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 21183442 - 21183379
Alignment:
| Q |
137 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccac |
200 |
Q |
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||||||||||||||||||| | ||||||||| |||||| |||||| || | |||||||| |||| |
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| T |
21183442 |
tgaaattaccttcactatcacatatgacaccaccgcagtcagcaactcctttgtcgatcaccac |
21183379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 488
Target Start/End: Complemental strand, 33715372 - 33715329
Alignment:
| Q |
445 |
gaaggaaaagaaagccttgaaattaccttcactattgcgtatga |
488 |
Q |
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| T |
33715372 |
gaaggaaaagacagccttgaaattaccttcactaccgcgtatga |
33715329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 477
Target Start/End: Complemental strand, 21313202 - 21313170
Alignment:
| Q |
445 |
gaaggaaaagaaagccttgaaattaccttcact |
477 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
21313202 |
gaaggaaaagacagccttgaaattaccttcact |
21313170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 282 - 385
Target Start/End: Complemental strand, 18726 - 18622
Alignment:
| Q |
282 |
atgttgatctcgtatgttactaccgttacaataagctagtccttttaatcaaatttctgtat-aaacgttcacgtgagtaagagagacgcacacatggat |
380 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||| |
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| T |
18726 |
atgttgatctcttatgttactacctttacaataagctagtccttttaatcaaatttctgtataaaacgttcacgtgactacgagagacgcacgcatggat |
18627 |
T |
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| Q |
381 |
aacta |
385 |
Q |
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||||| |
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| T |
18626 |
aacta |
18622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 18827 - 18769
Alignment:
| Q |
228 |
aaacctgctggaggttgttagttccttcaacaatttacgggatctccaccttttatgtt |
286 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18827 |
aaacctgttggaggttgttagttccttcaacaatttacgggatctccaccttttatgtt |
18769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 10334 - 10438
Alignment:
| Q |
137 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccacacagttccatcacagttaaaagccatgaaacctgct |
236 |
Q |
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|||||||||||||||| ||||||||| || | | ||||||||||| || | |||||||||| ||||| |||||| |||||| ||||| ||||||||| |
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| T |
10334 |
tgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgc--cacagctccatcgaagttaagagccacaaaacctgct |
10431 |
T |
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| Q |
237 |
ggaggtt |
243 |
Q |
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||||||| |
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| T |
10432 |
ggaggtt |
10438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 71632 - 71736
Alignment:
| Q |
137 |
tgaaattaccttcactatcgcgtatgacacctccgcagccagcaattcttatgtcgatcgccacacagttccatcacagttaaaagccatgaaacctgct |
236 |
Q |
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|||||||||||||||| ||||||||| || | | ||||||||||| || | |||||||||| ||||| |||||| |||||| ||||| ||||||||| |
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| T |
71632 |
tgaaattaccttcactttcgcgtatgccaacacggcagccagcaactcctctgtcgatcgc--cacagctccatcgaagttaagagccacaaaacctgct |
71729 |
T |
|
| Q |
237 |
ggaggtt |
243 |
Q |
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||||||| |
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|
| T |
71730 |
ggaggtt |
71736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 577
Target Start/End: Original strand, 46837 - 46913
Alignment:
| Q |
499 |
tctgtcgatcgccacgtgccatcacagataagagtcacaaaatctgctggtggctttatcttgccagagacacaagcag |
577 |
Q |
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|||||||||||||| | |||||| ||||||||| ||||||||||||||| | ||||||| |||||||||| ||||||| |
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| T |
46837 |
tctgtcgatcgccatgc-ccatcatagataagagccacaaaatctgctggagactttatc-tgccagagacgcaagcag |
46913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 488
Target Start/End: Original strand, 46771 - 46814
Alignment:
| Q |
445 |
gaaggaaaagaaagccttgaaattaccttcactattgcgtatga |
488 |
Q |
| |
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||||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
46771 |
gaaggaaaagacagccttgaaattaacttcactactgcgtatga |
46814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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