View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_31 (Length: 402)
Name: NF5931_low_31
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 40223945 - 40223561
Alignment:
| Q |
18 |
tttaggatgtttttagcttaaaattttccaaaacctatgnnnnnnngtttaataccagcacttactatattttttaagttaatgtannnnnnnggttcgg |
117 |
Q |
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| T |
40223945 |
tttaggatgtttttagcttaaaattttccaaaacctatgtttttttgtttaataccagcacttactatatttttgaagttaatgtatttttttggttcgg |
40223846 |
T |
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| Q |
118 |
gttgatgtctgactaattaataatatttggtccttgttttcaaagaagggtggttgaaacattctacaaatggcgtgaaacgttcggtgcatggagagat |
217 |
Q |
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| T |
40223845 |
gttgatgtctgactaattaataatatttggtccttgttttcaaagaagggtggttgaagcattctacaaatggcgtgaaacgttcggtgcatggagagat |
40223746 |
T |
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| Q |
218 |
aaaaccttctaccatcactaatcctctcaaccttaggtaaatgctcccatcatacctattttttgaagtaacatgtggctaacctaaaattttaagttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40223745 |
aaaaccttctaccatcactaatcctctcaaccttaggtaaatgctcccatcatacctattttttgaagtaacatgtggctaacctaaaattttaagttaa |
40223646 |
T |
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| Q |
318 |
taatatgtgcctagcttattttagcaaaacatttctgaagtattattattattgacttctnnnnnnnttgaattaactcttgtgt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40223645 |
taatatgtgcctagcttattttagcaaaacatttctgaagtattattattattgacttctaaaaaaattgaattaactcttgtgt |
40223561 |
T |
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