View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_32 (Length: 397)
Name: NF5931_low_32
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 53262277 - 53261920
Alignment:
| Q |
20 |
gaaacaaaggaataaaggcgtgacaaaacctttttcttcctattactttatttacactactagattaatccactaggccaagcataataattattgtttt |
119 |
Q |
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| T |
53262277 |
gaaacaaaggaataaaggcgtgacaaaacctttttcttcctattactttatttacactactagattaatccactaggccaagcataataattattgtttt |
53262178 |
T |
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| Q |
120 |
ataataccaaatcattctagaccgaaattacttctatcttggctcaatgtcctaaaccagctgaagtattaaagtacttatacaaaagcagcgcagcaca |
219 |
Q |
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| T |
53262177 |
atactaccaaatcattctagaccgaaattacttctatcttggctcaatgtcctaaaccagatgaagtattaaagtacttatacaaaagcagcacagcaca |
53262078 |
T |
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| Q |
220 |
accaagtacctaaccaatctcttgactgcattattgcatctaaacttgtttggataaacggcttaattaagcacttatggtatgtaagtgtttatgttta |
319 |
Q |
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| T |
53262077 |
accaagtacctaaccaatctcttgactgcattattgcatctaaacttgtttggataaacggcttaattaagcacttatggtatgtaagtgtttatgttta |
53261978 |
T |
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| Q |
320 |
taagttacttctataacaagataaaatagattcaatataagctgtaagttgtttgggg |
377 |
Q |
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| T |
53261977 |
taagttacttctataacaagataaaatagattcaatataagctgtaagttgtttgggg |
53261920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 11393557 - 11393524
Alignment:
| Q |
264 |
cttgtttggataaacggcttaattaagcacttat |
297 |
Q |
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| T |
11393557 |
cttgtttggataaacagcttaattaagcacttat |
11393524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 11410218 - 11410185
Alignment:
| Q |
264 |
cttgtttggataaacggcttaattaagcacttat |
297 |
Q |
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| T |
11410218 |
cttgtttggataaacagcttaattaagcacttat |
11410185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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