View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_36 (Length: 390)
Name: NF5931_low_36
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 27 - 351
Target Start/End: Original strand, 30819133 - 30819466
Alignment:
| Q |
27 |
aatttagacggtagttttaataagttgtcgattgtaaacgct----tagactgaa-----tctttagattgaaaattaaatatgaaataagatataatat |
117 |
Q |
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| T |
30819133 |
aatttagacagtagtattaataagttgtagattgtaaacgctaatttagaccgaagtccctctttagattgaaaattaaatatgaaataagatataatat |
30819232 |
T |
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| Q |
118 |
aattcaagttttgatgaaatattctaatttactttttatgatatt-gcttacttttcttgcaaaatatatcaaatttgaggacgggataaatttttcttt |
216 |
Q |
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| T |
30819233 |
aattcaagttttgatgaaatattctaatttactttttatgatatttgcttgcttttcttgcaaaatat-tcaaatttgaagacgggataaatttttcttt |
30819331 |
T |
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| Q |
217 |
gcaatatgtccacctttcttactctaaaacaataaattatcattttgaaactgtaaggttcaagaagtttagtctctctaagatttggaattgaaaatta |
316 |
Q |
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| T |
30819332 |
gcaatatgtacagctttcttactctgtaacaataaattatcattttgaaactgtaaggttcaagaagtttagtctctctaaggttcggaattgaaaatta |
30819431 |
T |
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| Q |
317 |
gtcccttaaactaaagcatattattatattagtta |
351 |
Q |
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| T |
30819432 |
gtcccttaaattaaagcatattattagtttagtta |
30819466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 339
Target Start/End: Original strand, 30813938 - 30814202
Alignment:
| Q |
78 |
tctttagattgaaaattaaa---tatgaaataagatataatataattcaagttttgatgaaatattctaatttactttttatgatattgcttacttttct |
174 |
Q |
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| T |
30813938 |
tctttaaattgaaaattaaaccatatgaaacatgatatagtataattcaaattttgatgaaatattctaatctactttttatgtcggtgctttctactct |
30814037 |
T |
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| Q |
175 |
tgcaaaatat--atcaaatttgaggacgggataaatttttctttgcaatatgtccacctttcttactctaaaacaataaattatcattttgaaactgtaa |
272 |
Q |
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| T |
30814038 |
aatctaattttgatgtaatttgaagttgggataaatttttctttgcaatatgtccaactttcctactataaaacaataaat-atcattctgaaac-gtaa |
30814135 |
T |
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| Q |
273 |
ggttcaagaagtttagtctctctaagatttggaattgaaaattagtcccttaaactaaagcatatta |
339 |
Q |
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| T |
30814136 |
ggttcaagaagtttagtctctttaatgttagaaattgaaaatcagtcccttaaactaaagcatatta |
30814202 |
T |
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