View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_39 (Length: 382)
Name: NF5931_low_39
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 54348029 - 54348374
Alignment:
| Q |
7 |
ggagcagagatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcc |
106 |
Q |
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| T |
54348029 |
ggagcagtgatatacataaaaagagacctcaaactatctaatgtccaaattgaaatcctagtaggcatcatcaaccttttctccttaataggttcctgcc |
54348128 |
T |
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| Q |
107 |
tcgctggccgaacctctgactggattggtcgccgttacaccatcgtccttgccggctccatcttcttcgcaggcgcactcctcatgggattctctcccaa |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348129 |
tcgccggccgaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttcttcgcaggcgcactcctcatgggattctctcccaa |
54348228 |
T |
|
| Q |
207 |
ctttgcctttctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348229 |
ctttgcctttctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcc |
54348328 |
T |
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| Q |
307 |
tctcgcggcttcctcacctccttccccgaggtacctaatagtactt |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54348329 |
tctcgcggcttcctcacctccttccccgaggtacctaatagtactt |
54348374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 116 - 338
Target Start/End: Original strand, 26152840 - 26153062
Alignment:
| Q |
116 |
gaacctctgactggattggtcgccgttacaccatcgtccttgccggctccatcttcttcgcaggcgcactcctcatgggattctctcccaactttgcctt |
215 |
Q |
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||||||| || ||||||||||| |||||||||||||| |||| || |||| ||||| | || || | |||||||| ||||| || |||| ||| |
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| T |
26152840 |
gaacctccgattggattggtcgtcgttacaccatcgtgtttgcaggggccattttctttgtcggagccttactcatgggtttctcaccaaactacaactt |
26152939 |
T |
|
| Q |
216 |
tctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcctctcgcggc |
315 |
Q |
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|||||||||| |||||| |||| || | || |||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
26152940 |
cctcatgtttggtcgttttgttgccggagttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggc |
26153039 |
T |
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| Q |
316 |
ttcctcacctccttccccgaggt |
338 |
Q |
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|| ||||| || ||||| ||||| |
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| T |
26153040 |
tttctcacttctttccctgaggt |
26153062 |
T |
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