View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_4 (Length: 662)
Name: NF5931_low_4
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 372
Target Start/End: Original strand, 40892820 - 40893180
Alignment:
| Q |
12 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaac |
111 |
Q |
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| T |
40892820 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaac |
40892919 |
T |
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| Q |
112 |
aacaataatatgagctaaaaaattaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaacctt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892920 |
aacaataatatgagctaaaaaattaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaacctt |
40893019 |
T |
|
| Q |
212 |
cttctaagattgtatttatgttgataaccatgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaacacctaaatacaaga |
311 |
Q |
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| T |
40893020 |
cttctaagattgtatttatgttgataaccatgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaacacctaaatacaaga |
40893119 |
T |
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| Q |
312 |
gtaaggtggtggtagtgtacctcttcaaaaaaggaacgtaatcttgatcctattgtttagt |
372 |
Q |
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| T |
40893120 |
gtaaggtggtggtagtgtacctcttcaaaaaaggaacgtaatcttgatcctattgtttagt |
40893180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 419 - 643
Target Start/End: Original strand, 40893227 - 40893451
Alignment:
| Q |
419 |
catatgcactctggcataataacacctttgcttgccggtaatttcttagaaatatgcaccatgatatcgtaaacatgttgtaaagcaatcatcattaaat |
518 |
Q |
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| T |
40893227 |
catatgcactctggcataataacacctttgcttgccggtaatttcttagaaatatgcaccatgatatcgtaaacatgttgtaaagcaataatcattaaat |
40893326 |
T |
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| Q |
519 |
aaacaaaacaagactttcattagagccatatagtcaaaacaagtacaattgatggcagggtttgggacatttcagttcacaaccaagtcctagaattcat |
618 |
Q |
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| T |
40893327 |
aaacaaaacaagactttcattagagccatatagtcaaaacaagtacaattgatggcagggtttgggacatttcagttcacaaccaagtcctagaattcat |
40893426 |
T |
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| Q |
619 |
gtgctgcagtattatacgaactaac |
643 |
Q |
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| T |
40893427 |
gtgctgcagtattatacgaactaac |
40893451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 44144307 - 44144510
Alignment:
| Q |
12 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaac |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44144307 |
cagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatacactctcaacctaacatgtgttattcacacacaaac |
44144406 |
T |
|
| Q |
112 |
aacaataatatgagctaaaaaattaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaacctt |
211 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
44144407 |
aacaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgattaaattgatgatcatagttacttgaattggccggaacctt |
44144506 |
T |
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| Q |
212 |
cttc |
215 |
Q |
| |
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|||| |
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| T |
44144507 |
cttc |
44144510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 44144533 - 44144622
Alignment:
| Q |
212 |
cttctaagattgtatttatgttgataaccatgct---agtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaaca |
298 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44144533 |
cttctaagattgtatttatgttgataaccatgctgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtagaaaca |
44144622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 44144656 - 44144706
Alignment:
| Q |
292 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacctcttcaaaaa |
342 |
Q |
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| T |
44144656 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaa |
44144706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 603 - 631
Target Start/End: Original strand, 44145007 - 44145035
Alignment:
| Q |
603 |
aagtcctagaattcatgtgctgcagtatt |
631 |
Q |
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| T |
44145007 |
aagtcctagaattcatgtgctgcagtatt |
44145035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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