View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_low_44 (Length: 343)
Name: NF5931_low_44
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_44 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 35946259 - 35946590
Alignment:
| Q |
12 |
ccaagaatatagattcatccaagtatacatgtagcactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35946259 |
ccaagaatatagattcatccaagtatacatgtagcactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaata |
35946358 |
T |
|
| Q |
112 |
taatttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35946359 |
taatttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccatt |
35946458 |
T |
|
| Q |
212 |
ggtatcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35946459 |
ggtatcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtattt |
35946558 |
T |
|
| Q |
312 |
ttcacctgcatcatcaccactaatattattaa |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35946559 |
ttcacctgcatcatcaccactaatattattaa |
35946590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 116 - 325
Target Start/End: Original strand, 35952508 - 35952717
Alignment:
| Q |
116 |
ttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggta |
215 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| ||| |||||| |||||||||||||| | ||| |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
35952508 |
ttattatcatcacaaagagtgattaattcgcattatttaacagttaacaaagacatagttaaccgtaaggtgaccctgctggtaaccttgtccattggta |
35952607 |
T |
|
| Q |
216 |
tcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtatttttca |
315 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||| | ||||||||||| || || ||||||||||| |||||| ||||||||||||||||||||||| ||| |
|
|
| T |
35952608 |
tcaatttgattgaagacattcacatccaagtctaacccaccattggcacattggtccactattcttactgttgcctgagctccagttgcagtatttgtca |
35952707 |
T |
|
| Q |
316 |
cctgcatcat |
325 |
Q |
| |
|
|||||||||| |
|
|
| T |
35952708 |
cctgcatcat |
35952717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 35939408 - 35939577
Alignment:
| Q |
156 |
caattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttgaagacattcacatctaagtcaagtccac |
255 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
35939408 |
caattaacaaagctatagttaactgtaaggtgaccattctgaacgccctgtccattggtatcaatttgattgaagacattcacatctaagtcaagtccac |
35939507 |
T |
|
| Q |
256 |
cattggcgcactgatccactattctcactgtttcctgagctccagttgcagtatttttcacctgcatcat |
325 |
Q |
| |
|
| |||| ||| || |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35939508 |
cgttggagcattggtccactattctcactgttacctgagctccagttgcagtatttgtcacctgcatcat |
35939577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 35952435 - 35952499
Alignment:
| Q |
15 |
agaatatagattcatccaagtatacatgtagcactgcttgttttatttatagtattattaggcagt |
80 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
35952435 |
agaatatatattcatccaagt-tacgtgtagcaccgcttgttttatttatggtattattagacagt |
35952499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University