View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_low_45 (Length: 333)
Name: NF5931_low_45
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 139 - 304
Target Start/End: Original strand, 33884970 - 33885134
Alignment:
| Q |
139 |
taaatggagcatacctgaactcagaaatgg-ggaagtgtttcccaaccctctcttcggaatcaacaatgatgtcatggaaactagatagaataatttaat |
237 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
33884970 |
taaatggagtatacctgaactaagaaatggaggaagtgtttcc-aaccctctcttcggaatcaacaatgatgtcatggaaacta-atagaataatttatt |
33885067 |
T |
|
| Q |
238 |
tattatacttgaatggaagaacatcatcttagttcaaccaaactaatttacttaacttctattttac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
33885068 |
tattatacttgaatggaagaacatcatcttagttcaaccaaactattttacttaacatctattttac |
33885134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 139 - 304
Target Start/End: Complemental strand, 33959282 - 33959118
Alignment:
| Q |
139 |
taaatggagcatacctgaactcagaaatgg-ggaagtgtttcccaaccctctcttcggaatcaacaatgatgtcatggaaactagatagaataatttaat |
237 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
33959282 |
taaatggagtatacctgaactaagaaatggaggaagtgtttcc-aaccctctcttcggaatcaacaatgatgtcatggaaacta-atagaataatttatt |
33959185 |
T |
|
| Q |
238 |
tattatacttgaatggaagaacatcatcttagttcaaccaaactaatttacttaacttctattttac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
33959184 |
tattatacttgaatggaagaacatcatcttagttcaaccaaactattttacttaacatctattttac |
33959118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 33884830 - 33884860
Alignment:
| Q |
7 |
ggaacagaggagaaagagggaacctgaggaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33884830 |
ggaacagaggagaaagagggaacctgaggaa |
33884860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 33959422 - 33959392
Alignment:
| Q |
7 |
ggaacagaggagaaagagggaacctgaggaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33959422 |
ggaacagaggagaaagagggaacctgaggaa |
33959392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University