View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_51 (Length: 312)
Name: NF5931_low_51
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 39790658 - 39790937
Alignment:
| Q |
1 |
aaaaattatagatattttttggatataaaataaagtcaaaattatttatgttttctttagtgacataaatcttggccaaaaactccaagcacttagtaga |
100 |
Q |
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| T |
39790658 |
aaaaattatagatattttttggatataaaataaagtcaaaattatttatgttttctttagtgacataaatcttggccaaaaactccaagcactgtgtaga |
39790757 |
T |
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| Q |
101 |
agttaggagtaagtgaaattcaatactaagtgatgattaatttaggagaaaagacccataaaagtttaagaacaacgtttacaacggtaagggcatcact |
200 |
Q |
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| T |
39790758 |
agttaggagtaagtgaaattcaatgctaagtgatgattaatttaggagcaaagacccataaaagtttaagaacaacgtttacaacggtaagggcatcact |
39790857 |
T |
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| Q |
201 |
taacttgtttcctatatgcatgtgatttacgtgaatttgtgttgctgtgtgattttatgagcatgttttcatgctgtctt |
280 |
Q |
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| T |
39790858 |
taatttgtttcctatatgcatgtgatttacgtgaatttgtgttgctgtgtgattttatgagcatgttttcatgctgtctt |
39790937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 39790949 - 39790996
Alignment:
| Q |
263 |
atgttttcatgctgtcttgttgtgacgattttctgattctgtgctgct |
310 |
Q |
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| T |
39790949 |
atgttttcatgctgtcttgttgtgacgattttctgattttgtgttgct |
39790996 |
T |
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