View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_54 (Length: 304)
Name: NF5931_low_54
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 74 - 287
Target Start/End: Original strand, 35946732 - 35946947
Alignment:
| Q |
74 |
ttacttattcaagagtataagatatttcaatccattatattaaaacattaaatcaaaatcatccacatagattaaagagtaaagacagcccaatatggat |
173 |
Q |
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| T |
35946732 |
ttacttattcaagagtataagatatttcaatccattatattaaaacattaaatcaaaatcatccacatagattaaagagtaaagacagcccaatatggat |
35946831 |
T |
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| Q |
174 |
tacaggctagagcacactaatattagaaaactcaattatatatctttaatatatttgctact--acatggtcgcaataaatcaactcttcattggtaatt |
271 |
Q |
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| T |
35946832 |
tacaggctagagcacactaatattagaaaactcaattatgtatctttaatatatttgctactacacatggtcgcaataaatcaactcttcattggtaatt |
35946931 |
T |
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| Q |
272 |
taactactcccttcgt |
287 |
Q |
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| T |
35946932 |
taactactcccttcgt |
35946947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 274
Target Start/End: Original strand, 35952911 - 35953107
Alignment:
| Q |
78 |
ttattcaagagtataagatatttcaatccattatattaaaacattaaatcaaaatcatccacatagattaaagagtaaagacagccca--atatggatta |
175 |
Q |
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| T |
35952911 |
ttattcaagagtaaaaggtaattcaatccattatattaaaacattacatcaaaatcatacacatagactgtagtgtaaagacagcccaatatatggagta |
35953010 |
T |
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| Q |
176 |
caggctagagcacactaatattagaaaactcaattatatatctttaatatatttgctactacatggtcgcaataaatcaactcttcattggtaatttaa |
274 |
Q |
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| T |
35953011 |
gaaggcagtg--caataatattagaaaactcaattgtatagctttaatatttttgctaccacatcttcacaataaagaaactcttccttgctaatttaa |
35953107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35946591 - 35946642
Alignment:
| Q |
1 |
ttcaactatcaaaagtaaacaaaaaatcctccttgaattaagtccatttaga |
52 |
Q |
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| T |
35946591 |
ttcaactatcaaaagtaaacaaaaaaatctccttgaattaagtccatttaga |
35946642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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