View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_56 (Length: 303)

Name: NF5931_low_56
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_56
NF5931_low_56
[»] chr4 (1 HSPs)
chr4 (18-303)||(30551668-30551965)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 30551668 - 30551965
Alignment:
Q  18 ataaaggggtagagtgacataagcacaaagaagctgaacagctaaacccaatgcaatccttatggcaatgtcctctttttctctattgaagcaagacctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30551668 ataaaggggtagagtgacataagcacaaagaagctgaacagctaaacccaatgcaatccttatggcaatgtcctctttttctctattgaagcaagacctt 30551767  T
Q  118 ggaccaaattcatactgttgtttattagttagtatagaatc-----accatatttaaaaaatttaacatctc--tagatctattgagcacacacc----- 205  Q
    |||||||||||||||||||||||||||||||||||||||||     | ||||| | ||||| ||||||||||  |||||||||| ||||||||||         
T  30551768 ggaccaaattcatactgttgtttattagttagtatagaatcatcatatcatatattaaaaagttaacatctctatagatctattcagcacacaccaatat 30551867  T
Q  206 aatattaattagtaattaactacttacccaactccaagtgaaaaatgcaagttgaaaggagttctgcatatgaatcataataatttaagcataagcat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30551868 aatattaattagtaattaactacttacccaactccaagtgaaaaatgcaagttgaaaggagttctgcatatgaatcataataatttaagcataagcat 30551965  T

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