View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_57 (Length: 299)
Name: NF5931_low_57
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 6899104 - 6898826
Alignment:
| Q |
1 |
cataccaaacaaacacacccaatctctcatagcttccttatacctcctagcgtcaccttcgccagcaccatagtatgtcttccctcccaccattctcaga |
100 |
Q |
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| T |
6899104 |
cataccaaacaaacacacccaatctctcatagcttccttatacctcctagcttcaccttcaccagcaccatagtatgtcttccctcccaccattctcaga |
6899005 |
T |
|
| Q |
101 |
gcaatattttgtgtcaaatcaccaaaccactgcttcatatcaaccaaaacaccttcttttggacaaccctttatcgaccataacctataaagctcactta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6899004 |
gcaatattttgtgtcaaatcaccaaaccactgcttcatatcaaccaaaacaccttcttttggacaaccctttatcgaccataacctataaagctcactta |
6898905 |
T |
|
| Q |
201 |
ctgcagcttctatctcagatactcttgtgtccttcaacagttcgagtcggtgatttgaaagaagctcaagtgtagctaa |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6898904 |
ctgcagcttctatctcagatactcttgtgtccttcaacagttcgagtcggtgattcgaaagaagctcaagtgtagctaa |
6898826 |
T |
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