View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_59 (Length: 293)

Name: NF5931_low_59
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_59
NF5931_low_59
[»] chr1 (1 HSPs)
chr1 (12-293)||(17773580-17773861)
[»] chr3 (3 HSPs)
chr3 (63-163)||(21516468-21516567)
chr3 (119-163)||(17546390-17546434)
chr3 (213-291)||(15486640-15486718)
[»] chr7 (1 HSPs)
chr7 (214-291)||(11953001-11953078)
[»] chr2 (3 HSPs)
chr2 (118-163)||(16374570-16374615)
chr2 (119-155)||(27180055-27180091)
chr2 (119-155)||(27829597-27829633)
[»] chr8 (1 HSPs)
chr8 (91-163)||(17815813-17815885)
[»] chr4 (1 HSPs)
chr4 (213-290)||(14089679-14089757)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 17773861 - 17773580
Alignment:
Q  12 aattctagccaaaaacaacgtagtgattcgaatcaccaaaagtctaattcaacatatacaaatagacaatatggacttgtgaagattgatacgaaacaaa 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17773861 aattctagccaaaaacaacatagtgattcgaatcaccaaaagtctgattcaacatatacaaatagacaatatggacttgtgaagattgatacgaaacaaa 17773762  T
Q  112 caaagcttgaatcgaatcaaagtaacccagatgaaggttgatacgattcaaaagattgtgatacaaatcaacatgccaaaaaacagcaccagaagaaaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17773761 caaagcttgaatcgaatcaaagtaacccagatgaaggttgatacgattcaaaagattgtgatacaaatcaacatgccaaaaaacagcaccagaagaaaac 17773662  T
Q  212 aatgatacgattgaagaaatcatgaatcgaatcaaaatgcttgacacacaagaaacaagggcagagagaatggttgatacaa 293  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17773661 aatgatatgattgaagaaatcatgaatcgaatcaaaatgcttgacacacaagaaacaagggcagagagaatggttgatacaa 17773580  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 21516468 - 21516567
Alignment:
Q  63 acatatacaaatagacaatatggacttgtgaagattgatacgaaacaaacaaagcttgaatcgaatcaaagtaacccagatgaaggttgatacgattcaa 162  Q
    ||||||| ||||||||||| ||||  | |||| ||||||||  | ||||||||||||||||| ||||||| |  |||||||||||||||||| |||||||    
T  21516468 acatatagaaatagacaatctggatgtatgaaaattgatacccatcaaacaaagcttgaatcaaatcaaaatctcccagatgaaggttgata-gattcaa 21516566  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 17546434 - 17546390
Alignment:
Q  119 tgaatcgaatcaaagtaacccagatgaaggttgatacgattcaaa 163  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||    
T  17546434 tgaatcgaatcaaagtagcccagatgaagattgatacgaatcaaa 17546390  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 15486640 - 15486718
Alignment:
Q  213 atgatacgattgaagaaatcatgaatcgaatcaaaatgcttgacacacaagaaacaagggcagagagaatggttgatac 291  Q
    ||||||||||| || | |||||||||||||||||| | | ||| || |||||| ||  ||||||||||||| |||||||    
T  15486640 atgatacgattcaaaagatcatgaatcgaatcaaactacatgaaactcaagaatcagaggcagagagaatgattgatac 15486718  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 11953078 - 11953001
Alignment:
Q  214 tgatacgattgaagaaatcatgaatcgaatcaaaatgcttgacacacaagaaacaagggcagagagaatggttgatac 291  Q
    |||||||||| |||||| ||||||| | |||||||||  |||||| ||||||||||||| ||||||| || |||||||    
T  11953078 tgatacgattcaagaaaccatgaatagtatcaaaatggatgacactcaagaaacaagggaagagagattgattgatac 11953001  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 16374570 - 16374615
Alignment:
Q  118 ttgaatcgaatcaaagtaacccagatgaaggttgatacgattcaaa 163  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  16374570 ttgaatcgaatcaaagtaacccagatgaaggttgatatgaatcaaa 16374615  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 27180091 - 27180055
Alignment:
Q  119 tgaatcgaatcaaagtaacccagatgaaggttgatac 155  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  27180091 tgaatcgaatcaaagtaacctagatgaaggttaatac 27180055  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 27829633 - 27829597
Alignment:
Q  119 tgaatcgaatcaaagtaacccagatgaaggttgatac 155  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  27829633 tgaatcgaatcaaagtaacctagatgaaggttaatac 27829597  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 17815885 - 17815813
Alignment:
Q  91 tgaagattgatacgaaacaaacaaagcttgaatcgaatcaaagtaacccagatgaaggttgatacgattcaaa 163  Q
    |||||||||||||||| ||| | ||||||||| ||||| ||| |   ||||||||| ||||||||||||||||    
T  17815885 tgaagattgatacgaatcaacctaagcttgaaacgaattaaaattttccagatgaatgttgatacgattcaaa 17815813  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 14089757 - 14089679
Alignment:
Q  213 atgatacgattgaa-gaaatcatgaatcgaatcaaaatgcttgacacacaagaaacaagggcagagagaatggttgata 290  Q
    ||||||||||| || | ||||||||||||||||||| | | ||| ||| ||||||||| ||||||||| ||| ||||||    
T  14089757 atgatacgattcaaaggaatcatgaatcgaatcaaactacatgaaacagaagaaacaaaggcagagaggatgattgata 14089679  T

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