View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_62 (Length: 278)

Name: NF5931_low_62
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_62
NF5931_low_62
[»] chr1 (5 HSPs)
chr1 (107-278)||(44040797-44040968)
chr1 (131-195)||(12294386-12294450)
chr1 (131-193)||(30795829-30795891)
chr1 (131-165)||(10427308-10427342)
chr1 (131-197)||(10427422-10427488)
[»] chr6 (5 HSPs)
chr6 (131-194)||(28907741-28907804)
chr6 (213-274)||(3808112-3808174)
chr6 (145-197)||(9155567-9155619)
chr6 (131-175)||(32279680-32279724)
chr6 (233-278)||(28757039-28757084)
[»] chr7 (4 HSPs)
chr7 (131-197)||(8722121-8722187)
chr7 (229-278)||(20103465-20103514)
chr7 (229-278)||(27544958-27545007)
chr7 (229-278)||(41029273-41029322)
[»] chr4 (9 HSPs)
chr4 (131-197)||(646055-646121)
chr4 (138-197)||(10214397-10214456)
chr4 (228-278)||(29908057-29908107)
chr4 (220-278)||(56204948-56205006)
chr4 (228-277)||(4059246-4059295)
chr4 (229-278)||(37193250-37193299)
chr4 (229-278)||(42845026-42845075)
chr4 (230-278)||(19908693-19908741)
chr4 (145-197)||(52636019-52636070)
[»] chr3 (7 HSPs)
chr3 (131-193)||(34996124-34996186)
chr3 (132-197)||(21594562-21594627)
chr3 (231-278)||(33771691-33771738)
chr3 (233-278)||(47377364-47377409)
chr3 (233-274)||(49604956-49604997)
chr3 (230-278)||(39869819-39869867)
chr3 (234-278)||(51250249-51250293)
[»] chr5 (4 HSPs)
chr5 (229-278)||(15725325-15725374)
chr5 (236-273)||(11265395-11265432)
chr5 (131-164)||(41863381-41863414)
chr5 (230-278)||(25509312-25509360)
[»] chr2 (4 HSPs)
chr2 (145-197)||(8905035-8905087)
chr2 (131-197)||(11090034-11090100)
chr2 (131-197)||(11681705-11681771)
chr2 (213-278)||(34977205-34977271)
[»] chr8 (2 HSPs)
chr8 (131-194)||(45521431-45521494)
chr8 (229-277)||(11052978-11053026)
[»] scaffold0040 (1 HSPs)
scaffold0040 (213-278)||(56785-56850)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 107 - 278
Target Start/End: Complemental strand, 44040968 - 44040797
Alignment:
Q  107 gaatgacactaacaaaataacttgaatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatatggtannnnn 206  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||         
T  44040968 gaatgacactaataaaataactcgaatttgcttaaggttataattggaaggagaaaaaatcatctcaaaacagtctactttttttacatatagtattttt 44040869  T
Q  207 nngtgatggctggggtttaaatccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
      ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| | |||||||||||    
T  44040868 ttgtgatggctggggtttaaacccggaccttgtatataatatgcattgtccctgctaattaagttaagctca 44040797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 12294450 - 12294386
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatat 195  Q
    ||||||||||||| ||||| ||||| |||||||||||| | ||||||  ||||||||||||||||    
T  12294450 aatttgcttaagggtataaatggaacgagaaaaagtcagcccaaaacgatctactttctttatat 12294386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 30795891 - 30795829
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttat 193  Q
    ||||| ||||| ||||||||||  ||||||||||| || | ||||||||||||||||||||||    
T  30795891 aattttcttaaagttataattgataggagaaaaagacagcccaaaacagtctactttctttat 30795829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 10427342 - 10427308
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaag 165  Q
    ||||| |||||||||||||||||||||||||||||    
T  10427342 aatttccttaaggttataattggaaggagaaaaag 10427308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 10427488 - 10427422
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    ||||| ||||||  ||||||||||||||||||||| || | |||||  || ||||||||||||||||    
T  10427488 aatttacttaagagtataattggaaggagaaaaaggcagcccaaaatggtatactttctttatatat 10427422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 28907804 - 28907741
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttata 194  Q
    ||||||||||||| ||||||||||| ||||||| |||| | |||||||||||||||||||||||    
T  28907804 aatttgcttaagggtataattggaatgagaaaatgtcagcccaaaacagtctactttctttata 28907741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 3808112 - 3808174
Alignment:
Q  213 tggctggggtttaaatc-cggaccttgtatataatatacattgtccttgctaactgagttaag 274  Q
    |||||||||||| |||| ||||||||| ||||| ||| |||||||||| ||||||||||||||    
T  3808112 tggctggggtttgaatctcggaccttgcatatattatgcattgtccttactaactgagttaag 3808174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 9155567 - 9155619
Alignment:
Q  145 tataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    ||||||||||| |||||||||||||| ||||| | | ||||||||||||||||    
T  9155567 tataattggaatgagaaaaagtcatcccaaaataatatactttctttatatat 9155619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 32279680 - 32279724
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaa 175  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||||    
T  32279680 aatttgcttaaggatataattagaaggagaaaaagtcagctcaaa 32279724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 28757039 - 28757084
Alignment:
Q  233 accttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||| ||||| |||||||||||||| | ||||||||||||||||    
T  28757039 accttgcatatattatacattgtccttaccaactgagttaagctca 28757084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 8722121 - 8722187
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    ||||||||||||  ||||||||||||||||||| | || | ||||||| ||||||||||||||||||    
T  8722121 aatttgcttaagcgtataattggaaggagaaaaggacaacccaaaacaatctactttctttatatat 8722187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 20103465 - 20103514
Alignment:
Q  229 ccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||||| ||| ||| |||||||||| | ||||||||||||||||    
T  20103465 ccggaccttgtaaatattatgcattgtccttaccaactgagttaagctca 20103514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 27545007 - 27544958
Alignment:
Q  229 ccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||| ||||| |||||||||||||| | ||||||| ||||||||    
T  27545007 ccggaccttgcatatattatacattgtccttaccaactgagataagctca 27544958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 41029322 - 41029273
Alignment:
Q  229 ccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||| ||||| |||||||||||||| | ||||||| ||||||||    
T  41029322 ccggaccttgcatatattatacattgtccttaccaactgagctaagctca 41029273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 646055 - 646121
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    |||||| |||||| | ||||| ||||||||||||| || ||||||| ||||||||||||||||||||    
T  646055 aatttgtttaagggtgtaattagaaggagaaaaagacaactcaaaagagtctactttctttatatat 646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 10214397 - 10214456
Alignment:
Q  138 ttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    |||||| |||||||||||||||||||| ||| | ||||| || ||| |||||||||||||    
T  10214397 ttaagggtataattggaaggagaaaaattcagcccaaaagagcctattttctttatatat 10214456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 29908107 - 29908057
Alignment:
Q  228 tccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    ||||||||||| ||||| ||| |||||||||| | ||||||||||||||||    
T  29908107 tccggaccttgcatatattatgcattgtccttaccaactgagttaagctca 29908057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 56205006 - 56204948
Alignment:
Q  220 ggtttaaatccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    ||||| ||||||||||||| ||||| ||| |||||||||| | ||||||||||| ||||    
T  56205006 ggtttgaatccggaccttgcatatattatgcattgtccttaccaactgagttaaactca 56204948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 4059246 - 4059295
Alignment:
Q  228 tccggaccttgtatataatatacattgtccttgctaactgagttaagctc 277  Q
    ||||||||||| ||||| |||||||||||||| | ||||||| |||||||    
T  4059246 tccggaccttgcatatattatacattgtccttcccaactgaggtaagctc 4059295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 37193299 - 37193250
Alignment:
Q  229 ccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||| ||||| |||||||||||| | ||||||||| ||||||||    
T  37193299 ccggaccttgcatatattatacattgtccatactaactgagctaagctca 37193250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 42845075 - 42845026
Alignment:
Q  229 ccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||| ||||| ||| |||||||||| | ||||||||||||||||    
T  42845075 ccggaccttgcatatattatgcattgtcctttccaactgagttaagctca 42845026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 19908741 - 19908693
Alignment:
Q  230 cggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    ||||||||| ||||| ||| |||||||||| | ||||||||||||||||    
T  19908741 cggaccttgcatatattatgcattgtccttaccaactgagttaagctca 19908693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 52636019 - 52636070
Alignment:
Q  145 tataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    |||||||||||||||||||| |||  || ||| ||||||||||||||||||||    
T  52636019 tataattggaaggagaaaaaatca-gtcgaaagagtctactttctttatatat 52636070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 34996124 - 34996186
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttat 193  Q
    ||||||||||||| ||||||||||||||||||||  || | |||||| |||||||||||||||    
T  34996124 aatttgcttaagggtataattggaaggagaaaaaaccagcccaaaacggtctactttctttat 34996186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 21594562 - 21594627
Alignment:
Q  132 atttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    ||||||| || | ||||||||||||||||||||| || | ||||||| ||||||||||||||||||    
T  21594562 atttgctaaatggtataattggaaggagaaaaaggcaacacaaaacaatctactttctttatatat 21594627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 33771738 - 33771691
Alignment:
Q  231 ggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||| ||||| |||||||||||||| | ||||||||||||||||    
T  33771738 ggaccttgcatatattatacattgtccttaccaactgagttaagctca 33771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 47377364 - 47377409
Alignment:
Q  233 accttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||||| ||| |||||||||| | ||||||||||||||||    
T  47377364 accttgtatatattatgcattgtccttaccaactgagttaagctca 47377409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 49604956 - 49604997
Alignment:
Q  233 accttgtatataatatacattgtccttgctaactgagttaag 274  Q
    |||||| ||||| |||||||||||||||| ||||||||||||    
T  49604956 accttgcatatattatacattgtccttgccaactgagttaag 49604997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 39869819 - 39869867
Alignment:
Q  230 cggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    ||||||||||||||| ||| |||||||||| | ||||||||||| ||||    
T  39869819 cggaccttgtatatattatgcattgtccttaccaactgagttaaactca 39869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 51250249 - 51250293
Alignment:
Q  234 ccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    ||||| ||||| |||||||||||||| | ||||||||||||||||    
T  51250249 ccttgcatatattatacattgtccttaccaactgagttaagctca 51250293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 15725325 - 15725374
Alignment:
Q  229 ccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||||||||| |||||||||| | | ||||||||||||||||||    
T  15725325 ccggaccttgtatatattatacattgttcatactaactgagttaagctca 15725374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 11265432 - 11265395
Alignment:
Q  236 ttgtatataatatacattgtccttgctaactgagttaa 273  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  11265432 ttgtatatattatacattgtccttgccaactgagttaa 11265395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 41863381 - 41863414
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaa 164  Q
    ||||||||||||| ||||||||||||||||||||    
T  41863381 aatttgcttaagggtataattggaaggagaaaaa 41863414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 25509360 - 25509312
Alignment:
Q  230 cggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    ||||||||| |||| |||| |||||||| | ||||||||||||||||||    
T  25509360 cggaccttgcatattatatgcattgtccctactaactgagttaagctca 25509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 8905035 - 8905087
Alignment:
Q  145 tataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    ||||||| |||||||||||||||| |||||||||  ||| |||||||||||||    
T  8905035 tataattagaaggagaaaaagtcagctcaaaacaacctattttctttatatat 8905087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 11090100 - 11090034
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    ||||||||||||| |||||||| || |||||||| ||| |  |||||| |||| |||||||||||||    
T  11090100 aatttgcttaagggtataattgaaatgagaaaaaatcagccgaaaacaatctattttctttatatat 11090034  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 11681705 - 11681771
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttatatat 197  Q
    |||||||||| |  |||||||| ||||||||||||||| | ||||||| ||||||||| || |||||    
T  11681705 aatttgcttaggagtataattgaaaggagaaaaagtcagcccaaaacaatctactttcgttgtatat 11681771  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 34977271 - 34977205
Alignment:
Q  213 tggctggggtttaaa-tccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||| |||||||||| ||||||||||| ||||| ||| |||||||| | | ||||||||||||||||    
T  34977271 tggccggggtttaaactccggaccttgcatatattatgcattgtccataccaactgagttaagctca 34977205  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 45521494 - 45521431
Alignment:
Q  131 aatttgcttaaggttataattggaaggagaaaaagtcatctcaaaacagtctactttctttata 194  Q
    |||||| |||||  |||||||||||||||||||||||| | |||||| | ||| ||||||||||    
T  45521494 aatttgtttaagtgtataattggaaggagaaaaagtcaacccaaaacggcctattttctttata 45521431  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 11053026 - 11052978
Alignment:
Q  229 ccggaccttgtatataatatacattgtccttgctaactgagttaagctc 277  Q
    |||||||||| ||||| ||| |||||||| | |||||||||||||||||    
T  11053026 ccggaccttgcatatattatgcattgtccatactaactgagttaagctc 11052978  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 56850 - 56785
Alignment:
Q  213 tggctggggtttaaatccggaccttgtatataatatacattgtccttgctaactgagttaagctca 278  Q
    |||||||||||| || | |||||||| ||||| |||||||||||| | | ||||||| ||||||||    
T  56850 tggctggggtttgaaactggaccttgcatatattatacattgtccataccaactgagctaagctca 56785  T

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