View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_63 (Length: 277)
Name: NF5931_low_63
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_63 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 10344579 - 10344856
Alignment:
| Q |
1 |
gagataagggtcggaaaatgctttacctaaatttttgaaagtttacaaagttcagtttgatttatgtgtattgttgaggttcacctgggataggtagaaa |
100 |
Q |
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| T |
10344579 |
gagataagggtcggaaaatgttttactgaaagttttgaaagtttacaaagttcagtttgatttatgtgtattgttgaggttcacctgggataggtagaaa |
10344678 |
T |
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| Q |
101 |
actttaagaattggtgtttacttgagttgttgtgtgtattaggttacttaactcgaggagttggagttgtttgtgttgtagagcatacgagttgtagagt |
200 |
Q |
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| T |
10344679 |
actttaagaactggtgtttacttgagttgtcgtgtgtattaggttacttaactcgaggaggtggagtcgtttgtgttgtagagcatacgagttgtagagt |
10344778 |
T |
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| Q |
201 |
tgtacatgtttaaggaaaattgaaatacgataagggcattctctagcaatatca-tacttacttaaatgcatttggtt |
277 |
Q |
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| T |
10344779 |
tgtacatgtttaaggaaaattgaaatacgataagggcattctctagcaatatcattacttacttaaatgcatttggtt |
10344856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10346542 - 10346780
Alignment:
| Q |
1 |
gagataagggtcggaaaatgctttacctaaatttttgaaagtttacaaagttcagtttgatttatgtgtattgttgaggttcacctgggataggtag-aa |
99 |
Q |
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| T |
10346542 |
gagataagggtcaaaaaatgttttacctaaaattttaaaagtttacaaagatcagtttgatttatgtgtattgttgagcttcacttgggataggtagaaa |
10346641 |
T |
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| Q |
100 |
aactttaagaattggtgtttacttgagttgttgtgtgtattaggttacttaactcgaggagttggagttgtttgtgttgtagagcatacgagttgtagag |
199 |
Q |
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| T |
10346642 |
aaccttaagaactagtgtttacttgagttgttgtgtgtattagcatacttaa---taggagtttgagtcgttcgtgttgtaacgcaaacgagttgtagag |
10346738 |
T |
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| Q |
200 |
ttgtacatgtttaaggaaaattgaaatacgataagggcattc |
241 |
Q |
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| T |
10346739 |
ttgtccgtgtgtaaggaaaattgaattacgataagggcattc |
10346780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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