View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_67 (Length: 264)
Name: NF5931_low_67
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 247
Target Start/End: Complemental strand, 28187931 - 28187744
Alignment:
| Q |
60 |
ttggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatcattttcctttattac |
159 |
Q |
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| T |
28187931 |
ttggatagagtgatttgtaatcaaaactggctggatgtttgcaactctctgaatgtgtcaacactggtaaagcacaagtcggatcactttccactattac |
28187832 |
T |
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| Q |
160 |
ttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggatgat |
247 |
Q |
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| T |
28187831 |
ttgaatttgataattctactcatagttttacttcccaatttaaattcatgcaattgtggacccatcataaagattgtcacagggtgat |
28187744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 14720112 - 14720160
Alignment:
| Q |
199 |
tcaaattcatgcatatgtggacacatcatgaggattgtcataggatgat |
247 |
Q |
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| T |
14720112 |
tcaaattcatgcatatgtgcacacatcatgaggattgtcataggatgat |
14720160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 7572295 - 7572472
Alignment:
| Q |
60 |
ttggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatcattttcctttattac |
159 |
Q |
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| T |
7572295 |
ttggatagagttatttttaatcaacaccggctggatgtctgcaattctctgaatgtgtcaacactggtaaagcataagtctgatcactttccactgttac |
7572394 |
T |
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| Q |
160 |
ttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtc |
237 |
Q |
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| T |
7572395 |
ttgaatttgataattcttctcatagttttgcttcccaatttaaatttatgcaaatgtggacccaccataaagattgtc |
7572472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 10009597 - 10009703
Alignment:
| Q |
129 |
aagcacaagtctgatcattttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatg |
228 |
Q |
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| T |
10009597 |
aagcacaagtcagatcattttcctcttttagttgagtttgaaacttctcatcatagttttttgtcgcaatttaagtttatgcaaatgtggattcatcatg |
10009696 |
T |
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| Q |
229 |
aggattg |
235 |
Q |
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| T |
10009697 |
aagattg |
10009703 |
T |
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