View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_68 (Length: 261)
Name: NF5931_low_68
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38181571 - 38181325
Alignment:
| Q |
1 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggcttcaacatcg |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38181571 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcg |
38181472 |
T |
|
| Q |
97 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaagca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
38181471 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttccctttttcatcaagca |
38181372 |
T |
|
| Q |
197 |
tcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181371 |
tcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
38181325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38189560 - 38189806
Alignment:
| Q |
1 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggcttcaacatcg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38189560 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcg |
38189659 |
T |
|
| Q |
97 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaagca |
196 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
38189660 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttccctttttcatcaagca |
38189759 |
T |
|
| Q |
197 |
tcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38189760 |
tcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
38189806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38216785 - 38217031
Alignment:
| Q |
1 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggcttcaacatcg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38216785 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcg |
38216884 |
T |
|
| Q |
97 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaagca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
38216885 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttcttccctttttcatcaagca |
38216984 |
T |
|
| Q |
197 |
tcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38216985 |
tcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
38217031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38208797 - 38208549
Alignment:
| Q |
1 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat----catcattgtgaaataaacgactgccggcttcaacatcg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38208797 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcg |
38208698 |
T |
|
| Q |
97 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaac-atc-gtcctccaatgaaattggcttctttccattttcatcaag |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || ||||||||||| |
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|
| T |
38208697 |
tcctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacgatcggtcctccaatgaaattggcttcttccctttttcatcaag |
38208598 |
T |
|
| Q |
195 |
catcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38208597 |
catcataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
38208549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 38456930 - 38456686
Alignment:
| Q |
5 |
ttgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttat------catcattgtgaaataaacgactgccggcttcaacatcgtc |
98 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38456930 |
ttgtgttgcaaacaatataagctttttatatcttgtcatgcaagttactgttatatatatcatcattgtcaaataaacgactgccggcttcaacatcgtc |
38456831 |
T |
|
| Q |
99 |
ctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaagcatc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38456830 |
ctccaaattactgaagtcaatcaaatccatgaaatcatcaaggtttgcttcaaaatcgtcctccaatgaaattggcttcttcccattttcatcaagcatc |
38456731 |
T |
|
| Q |
199 |
ataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456730 |
ataggtgaaggaagtggaaggtatgaacatggtgagggtagagct |
38456686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 26032570 - 26032771
Alignment:
| Q |
4 |
attgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattgtgaaataaacgactgccggcttcaacatcgtcctcca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
26032570 |
attgtgttgcaaacactataagctttttatatcgtgtcatgcaagttacggttatcatcattgtcaaataaacgaccgccggcttcaacatcgtcctcca |
26032669 |
T |
|
| Q |
104 |
aattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatc |
191 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||||| |
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|
| T |
26032670 |
aattactgaagtcaatacatagaaatggatccatgaagtcatcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatc |
26032769 |
T |
|
| Q |
192 |
aa |
193 |
Q |
| |
|
|| |
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|
| T |
26032770 |
aa |
26032771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 38171907 - 38172025
Alignment:
| Q |
1 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattgtgaaataaacgactgccggcttcaacatcgtcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |
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|
| T |
38171907 |
aaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggtttcaacatcgtcct |
38172006 |
T |
|
| Q |
101 |
ccaaattactgaagtcaat |
119 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
38172007 |
ccaaattactgaagtcaat |
38172025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 53350943 - 53351013
Alignment:
| Q |
123 |
atccatgaaatcatcaaggtttgcttcaacatcgtcctccaatgaaattggcttctttccattttcatcaa |
193 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |
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|
| T |
53350943 |
atccatcaagtcatcaaggtttgcttcaacatcgtccttcaaagaaattggcttctttcctttttcatcaa |
53351013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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