View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_7 (Length: 606)

Name: NF5931_low_7
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_7
NF5931_low_7
[»] chr2 (5 HSPs)
chr2 (509-590)||(28220359-28220439)
chr2 (376-500)||(28218023-28218147)
chr2 (392-495)||(8178731-8178834)
chr2 (429-495)||(45328894-45328960)
chr2 (428-487)||(16291553-16291612)
[»] chr4 (3 HSPs)
chr4 (371-500)||(48624748-48624877)
chr4 (449-495)||(27452402-27452448)
chr4 (445-478)||(16001023-16001056)
[»] chr5 (4 HSPs)
chr5 (371-495)||(25924-26048)
chr5 (371-495)||(1289747-1289873)
chr5 (392-495)||(7090193-7090296)
chr5 (396-494)||(21913203-21913301)
[»] chr3 (4 HSPs)
chr3 (371-495)||(51449923-51450047)
chr3 (371-495)||(52137129-52137253)
chr3 (371-463)||(3367764-3367855)
chr3 (428-499)||(9257038-9257109)
[»] chr8 (3 HSPs)
chr8 (429-495)||(15217515-15217581)
chr8 (396-489)||(21239700-21239793)
chr8 (425-492)||(13587653-13587721)
[»] chr1 (1 HSPs)
chr1 (392-495)||(49349652-49349755)
[»] chr6 (2 HSPs)
chr6 (371-495)||(6080387-6080511)
chr6 (429-495)||(20429914-20429980)
[»] scaffold0001 (1 HSPs)
scaffold0001 (430-495)||(440839-440904)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 509 - 590
Target Start/End: Original strand, 28220359 - 28220439
Alignment:
Q  509 gttaccattgtccaagcttctctattcaacttcgggaagattgatttttggctccgtgaagttgaccgtgaaatcaccatcc 590  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28220359 gttaccatcgtccaagcttctctattcaacttcgggaagattga-ttttggctccgtgaagttgaccgtgaaatcaccatcc 28220439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 376 - 500
Target Start/End: Original strand, 28218023 - 28218147
Alignment:
Q  376 aatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacac 475  Q
    |||||||| || ||| |||||||||||||  |||| |||||||||| ||||||||||| ||||  ||| ||||||||| || |||||||||||||||||     
T  28218023 aatcttctcgtttgatttcctaataagaaagaaatctatctgagaataagtcaccccattcttgcatgtgataagatgttcatctcttttcctaaaacat 28218122  T
Q  476 gtattagttatagtaagatcgaaac 500  Q
    |||||| |||||||| |||| ||||    
T  28218123 gtattaattatagtaggatcaaaac 28218147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 8178834 - 8178731
Alignment:
Q  392 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 491  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||||| |||||||||| ||||||| ||||| ||||||| ||||||||    
T  8178834 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataaaatgctcctctattttcctgaaacaagtattagctatagtaa 8178735  T
Q  492 gatc 495  Q
    ||||    
T  8178734 gatc 8178731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 45328894 - 45328960
Alignment:
Q  429 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 495  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  45328894 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagcgatagtaagatc 45328960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 487
Target Start/End: Complemental strand, 16291612 - 16291553
Alignment:
Q  428 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttata 487  Q
    ||||||||||| || | |||||||||||||||||||||||| ||||| ||||||| ||||    
T  16291612 accccactcttgtaagtgataagatgctcctctcttttcctgaaacaagtattagctata 16291553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 500
Target Start/End: Original strand, 48624748 - 48624877
Alignment:
Q  371 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 470  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||| |||||||||||||||||||| |    
T  48624748 aaacaaatcttcctgtcagatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgattagatgctcctctcttttcctga 48624847  T
Q  471 aacacgtattagttatagtaagatcgaaac 500  Q
    |||| ||||||| |||||||||||| ||||    
T  48624848 aacaagtattagctatagtaagatcaaaac 48624877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 495
Target Start/End: Original strand, 27452402 - 27452448
Alignment:
Q  449 agatgctcctctcttttcctaaaacacgtattagttatagtaagatc 495  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  27452402 agatgctcatctcttttcctaaaacatgtattagctatagtaagatc 27452448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 478
Target Start/End: Complemental strand, 16001056 - 16001023
Alignment:
Q  445 gataagatgctcctctcttttcctaaaacacgta 478  Q
    ||||||||||||||||||||||||||||||||||    
T  16001056 gataagatgctcctctcttttcctaaaacacgta 16001023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 26048 - 25924
Alignment:
Q  371 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 470  Q
    |||| ||||||  ||||||| ||||||||||||| ||||| |||||||||| |  | | | ||||||| || | |||||||||||||||||| |||| ||    
T  26048 aaacaaatctttatgtatgaattcctaataagaaaaaaatctatctgagaacatattatcgcactcttgtaagtgataagatgctcctctctgttccaaa 25949  T
Q  471 aacacgtattagttatagtaagatc 495  Q
    |||||||||||| |||| |||||||    
T  25948 aacacgtattagctataataagatc 25924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 1289747 - 1289873
Alignment:
Q  371 aaaccaatcttcttgtatgacttcctaataagaa-gaaa-atatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcct 468  Q
    |||| ||||||| |||  || ||||||||||||| |||| ||||||||||||| | |  ||| ||||||| || | ||||||||||||||||||||||||    
T  1289747 aaacaaatcttcctgtcggatttcctaataagaaagaaatatatatctgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcct 1289846  T
Q  469 aaaacacgtattagttatagtaagatc 495  Q
     ||||| ||||||| ||||||||||||    
T  1289847 gaaacaagtattagctatagtaagatc 1289873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 495
Target Start/End: Complemental strand, 7090296 - 7090193
Alignment:
Q  392 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 491  Q
    |||||||||||||  ||||  ||||||||| | || | ||| ||||| |||| ||||||||||||| |||||||| || |||||||||||| || |||||    
T  7090296 ttcctaataagaaagaaattcatctgagaacatgttaacccgctcttgtatgtgataagatgctccactcttttcatagaacacgtattagctacagtaa 7090197  T
Q  492 gatc 495  Q
    ||||    
T  7090196 gatc 7090193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 494
Target Start/End: Complemental strand, 21913301 - 21913203
Alignment:
Q  396 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagat 494  Q
    |||||||||  |||| |||||| ||| | | ||||||||| ||||||  ||||||||| ||| |||||| | |||| ||| |||||| |||||||||||    
T  21913301 taataagaaagaaatttatctgtgaacatgccaccccactattatatatgataagatgttccactctttacttaaagcacttattagctatagtaagat 21913203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 51449923 - 51450047
Alignment:
Q  371 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 470  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||||||| ||||||| |    
T  51449923 aaacaaatcttcctgtcggatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcctctattttcctga 51450022  T
Q  471 aacacgtattagttatagtaagatc 495  Q
    |||| ||||||| ||||||||||||    
T  51450023 aacaagtattagctatagtaagatc 51450047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 52137253 - 52137129
Alignment:
Q  371 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 470  Q
    |||| ||||||| |||  || |||||||||||||  |||| || ||||||| | |  |||||||||||  | | |||| ||||||||||||||||||| |    
T  52137253 aaacaaatcttcctgtcggatttcctaataagaaagaaatctacctgagaacatgagaccccactcttgaaagtgataggatgctcctctcttttcctga 52137154  T
Q  471 aacacgtattagttatagtaagatc 495  Q
    |||| ||||||| ||||||||||||    
T  52137153 aacaagtattagctatagtaagatc 52137129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 463
Target Start/End: Complemental strand, 3367855 - 3367764
Alignment:
Q  371 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctctt 463  Q
    |||| ||||||| |||  |||||| |||||||||  |||| ||||| |||| | |||||| ||||||| ||||||||||||||||||||||||    
T  3367855 aaacaaatcttcatgtcagacttcttaataagaaagaaatctatct-agaacatgtcaccgcactcttgtatgcgataagatgctcctctctt 3367764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 9257109 - 9257038
Alignment:
Q  428 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatcgaaa 499  Q
    ||||||||||| || | ||||| |||||| |||||||| |||||||| ||||||| ||  ||||||||||||    
T  9257109 accccactcttgtaagtgataaaatgctcatctctttttctaaaacatgtattagctacggtaagatcgaaa 9257038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 15217515 - 15217581
Alignment:
Q  429 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 495  Q
    |||||||||| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15217515 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagctatagtaagatc 15217581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 21239700 - 21239793
Alignment:
Q  396 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagt 489  Q
    |||||| || || ||||||||||||| | ||||||| | |||| || | |||||||||||| |||||||| ||||||||| |||||| ||||||    
T  21239700 taataaaaaaaatatatatctgagaacatgtcacccaattcttgtaagtgataagatgctcatctctttttctaaaacacatattagctatagt 21239793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 492
Target Start/End: Complemental strand, 13587721 - 13587653
Alignment:
Q  425 gtcaccccactcttatatgcgataagatgctcctctcttttcct-aaaacacgtattagttatagtaag 492  Q
    |||||||| ||||| || | ||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  13587721 gtcacccctctcttgtaagtgataagatgctcctctctttttctaaaaaaatgtattagctatagtaag 13587653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 49349652 - 49349755
Alignment:
Q  392 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 491  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||| ||| ||||||| ||||| ||||||| ||||||||    
T  49349652 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcatctattttcctgaaacaagtattagctatagtaa 49349751  T
Q  492 gatc 495  Q
    ||||    
T  49349752 gatc 49349755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 371 - 495
Target Start/End: Complemental strand, 6080511 - 6080387
Alignment:
Q  371 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 470  Q
    |||| ||||||| |||  || |||||||||||||  |||| ||| |||||| | |  ||| ||||||| || | |||||||||||||||||||||||  |    
T  6080511 aaacaaatcttcctgtcggatttcctaataagaaataaatctatttgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcccga 6080412  T
Q  471 aacacgtattagttatagtaagatc 495  Q
    |||| ||||||| ||||||||||||    
T  6080411 aacaagtattagctatagtaagatc 6080387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 20429914 - 20429980
Alignment:
Q  429 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 495  Q
    ||||||||||||| | ||| ||||| ||||||||||||||||| |||||||||  ||||||||||||    
T  20429914 ccccactcttataagtgatgagatggtcctctcttttcctaaagcacgtattaactatagtaagatc 20429980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 430 - 495
Target Start/End: Complemental strand, 440904 - 440839
Alignment:
Q  430 cccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 495  Q
    ||||||||| || | ||| |||||||||||||||||||||||| ||||||||   |||||||||||    
T  440904 cccactcttgtaagtgatgagatgctcctctcttttcctaaaatacgtattaacgatagtaagatc 440839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University