View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_71 (Length: 253)
Name: NF5931_low_71
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_71 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 40223290 - 40223532
Alignment:
| Q |
10 |
aagaatatttaaagagatttaattgaagcatatataaaaggtaataggtggattgagtggaaatgaaaaataaataaaatactacagacaaagtagtaga |
109 |
Q |
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| T |
40223290 |
aagaatatttaaagagatttaattgatgcatatataaaaggtaataggtggattgagtggaaatgaaaaataaataaaatactacagacaaagtagtaga |
40223389 |
T |
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| Q |
110 |
tagccaaatagggaacatagatgataagattaagtaaaaagaaatagttaaaatnnnnnnnntacccaataacatatatgtcagctggcgaagtagatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40223390 |
tagccaaatagggaacatagatgataagattaagtaaaaagaaatagttaaaat-aaaaaaatacccaataacatatatgtcagctggcgaagtagatat |
40223488 |
T |
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| Q |
210 |
cagccaatttttcaagtccaaattttcatttggtgactttcccc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40223489 |
cagccaatttttcaagtccaaattttcatttggtgactttcccc |
40223532 |
T |
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