View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5931_low_75 (Length: 248)
Name: NF5931_low_75
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_75 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53262556 - 53262791
Alignment:
| Q |
1 |
aaatttgttaatgtttgttctttcaggttggtttggatggacttcgcatgctagatccgaataccagtcggacattgagaatatatcctcttgagaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53262556 |
aaatttgttaatgtttgttctttcaggttggtttggatggacttcgcatgctagatccgaataccagtcggacattgagaatatatcctcttgagaacat |
53262655 |
T |
|
| Q |
101 |
aaccagatgtgatgtgagcttcttgatttctttcctgataattcatcgtatttgtgagattcattttcctatcgaatttaaaaataacgttttgttaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53262656 |
aaccagatgtgatgtgagcttcttgatttctttcctgataattcatcgtatttgtgagattcattttcctatcgaatttaaaaataacgttttgttaatt |
53262755 |
T |
|
| Q |
201 |
gaataatgcagagattcgattcatctacctttgcat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
53262756 |
gaataatgcagagattcgattcatctacctttgcat |
53262791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University