View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_82 (Length: 238)
Name: NF5931_low_82
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 21214562 - 21214672
Alignment:
| Q |
114 |
aaaaatatctgagtcagtacaaacacataatgtgtgttgattagctgcacaatttcttgttggtaaattgaggaataatgtttaatttaatcatccatca |
213 |
Q |
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| T |
21214562 |
aaaaatatctgagtcagtacagacacataatgtgtgttgattagctgcacaatttcttgttggtaaattgaggaataatgtttaatttaatcatccatca |
21214661 |
T |
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| Q |
214 |
aaacaaataat |
224 |
Q |
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| T |
21214662 |
aaacaaataat |
21214672 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 53219959 - 53220017
Alignment:
| Q |
47 |
ccaaaaattgtatatatacgattcggaaaatacaattcgaaaaccttcataatagttca |
105 |
Q |
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| T |
53219959 |
ccaaaacttataaatatatgattcggagaatacaatttgaaaaccttcataatagttca |
53220017 |
T |
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