View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_83 (Length: 238)
Name: NF5931_low_83
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 55172176 - 55172377
Alignment:
| Q |
18 |
cttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaac |
117 |
Q |
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| T |
55172176 |
cttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaac |
55172275 |
T |
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| Q |
118 |
tcaaagctgcattagaaaaaccataattaatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacc |
217 |
Q |
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| T |
55172276 |
tcaaagctgcattagaaaaaccataaataatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacc |
55172375 |
T |
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| Q |
218 |
tg |
219 |
Q |
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|| |
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| T |
55172376 |
tg |
55172377 |
T |
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