View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5931_low_89 (Length: 231)
Name: NF5931_low_89
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5931_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 25180172 - 25180372
Alignment:
| Q |
14 |
gcacagaccagttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag |
113 |
Q |
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| T |
25180172 |
gcacagaccagttaatgatcaatgttatacctatcacacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaag |
25180271 |
T |
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| Q |
114 |
ttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccattt |
213 |
Q |
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| T |
25180272 |
ttgataatgtgcaactaaataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccattt |
25180371 |
T |
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| Q |
214 |
g |
214 |
Q |
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| T |
25180372 |
g |
25180372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 25168513 - 25168704
Alignment:
| Q |
23 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
122 |
Q |
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| T |
25168513 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25168612 |
T |
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| Q |
123 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttg |
214 |
Q |
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| T |
25168613 |
tgcaactaaataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttg |
25168704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 25252753 - 25252562
Alignment:
| Q |
23 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
122 |
Q |
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| T |
25252753 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25252654 |
T |
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| Q |
123 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttg |
214 |
Q |
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| T |
25252653 |
tgcaactaaataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttg |
25252562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 25159966 - 25160133
Alignment:
| Q |
37 |
gttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataag |
136 |
Q |
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| T |
25159966 |
gttatgcctattacacccttttgagattctttatactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagg |
25160065 |
T |
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| Q |
137 |
gttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccatt |
204 |
Q |
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| T |
25160066 |
gctcgatcgcagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccatt |
25160133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 9213949 - 9213812
Alignment:
| Q |
67 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaat |
166 |
Q |
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| T |
9213949 |
tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat |
9213850 |
T |
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| Q |
167 |
tgggattaaaccaagaagagcatcgacctggtgccatt |
204 |
Q |
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| T |
9213849 |
ttggattcaaccaactagaacaacgacctggtgccatt |
9213812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 30361145 - 30361048
Alignment:
| Q |
67 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgca |
164 |
Q |
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| T |
30361145 |
tgatattttgtcttgtaaacttgaacagcggctgcatgagcaaggagtaggtgatgtgcaactaaatatggctctgtccccgaatcaccaccggtgca |
30361048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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