View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_91 (Length: 227)

Name: NF5931_low_91
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_91
NF5931_low_91
[»] chr1 (3 HSPs)
chr1 (1-227)||(4809559-4809785)
chr1 (114-146)||(36619575-36619607)
chr1 (114-146)||(22891626-22891658)
[»] chr2 (5 HSPs)
chr2 (30-146)||(36995856-36995972)
chr2 (57-146)||(36776596-36776685)
chr2 (19-146)||(33005097-33005224)
chr2 (77-146)||(1110549-1110617)
chr2 (114-146)||(6042067-6042099)
[»] chr6 (1 HSPs)
chr6 (1-147)||(6086824-6086970)
[»] chr4 (2 HSPs)
chr4 (1-143)||(28627349-28627491)
chr4 (114-146)||(29370037-29370069)
[»] chr3 (2 HSPs)
chr3 (30-146)||(47923182-47923298)
chr3 (114-146)||(46279556-46279588)
[»] chr8 (3 HSPs)
chr8 (76-146)||(776586-776656)
chr8 (76-146)||(782240-782310)
chr8 (58-146)||(11921051-11921138)
[»] chr5 (1 HSPs)
chr5 (104-146)||(7361741-7361783)
[»] chr7 (1 HSPs)
chr7 (103-146)||(40702668-40702711)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4809559 - 4809785
Alignment:
Q  1 aacacaatgtaaataaggatatattacgaataataggataataatgggtacgtgggggactgcaatgacacctaggggtctcctacgagatcggggacag 100  Q
    ||||||||||||   | ||||||||| | |||||| |||||| || ||||||| | |||||||| || |||||| ||||||||| ||||||| |||||||    
T  4809559 aacacaatgtaatatatgatatattatggataatatgataattataggtacgttgaggactgcagtggcacctatgggtctcctgcgagatccgggacag 4809658  T
Q  101 accccgggcgtaggcccaggctagctgggtggtaaaaccgcccctgttttagtggataattatatgtatccatatccataatgcaggttttaccatgctc 200  Q
    | |||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4809659 agcccaagcgtgtgcccaggctagctgggtggtaaaaccgcccctgttttagtggataattatatgtatccatatccataatgcaggttttaccatgctc 4809758  T
Q  201 atttagacccatatcaatttagatatt 227  Q
    |||||||||||||||||||||||||||    
T  4809759 atttagacccatatcaatttagatatt 4809785  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 36619575 - 36619607
Alignment:
Q  114 gcccaggctagctgggtggtaaaaccgcccctg 146  Q
    |||||||||||||||||||||||||||||||||    
T  36619575 gcccaggctagctgggtggtaaaaccgcccctg 36619607  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 22891658 - 22891626
Alignment:
Q  114 gcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||||||||||||||||||| |||||||||    
T  22891658 gcccaggctagctgggtggtaaatccgcccctg 22891626  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 36995856 - 36995972
Alignment:
Q  30 ataataggataataatgggtacgtgggggactgcaatgacacctaggggtctcctacgagatcggggacagaccccgggcgtaggcccaggctagctggg 129  Q
    |||||| |||||| || || |||| | |||||||  || |||||| ||||||||||||||||| |||||||| |||||||||  ||||||||||||||||    
T  36995856 ataatatgataattataggcacgttgaggactgctgtggcacctatgggtctcctacgagatccgggacagagcccgggcgtgtgcccaggctagctggg 36995955  T
Q  130 tggtaaaaccgcccctg 146  Q
    |||||||||||||||||    
T  36995956 tggtaaaaccgcccctg 36995972  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 36776685 - 36776596
Alignment:
Q  57 ggactgcaatgacacctaggggtctcctacgagatcggggacagaccccgggcgtaggcccaggctagctgggtggtaaaaccgcccctg 146  Q
    |||||||| || |||||| ||||||||||| ||||  ||||| || ||| |||||  ||||||| ||||||||||||||||||| |||||    
T  36776685 ggactgcagtggcacctatgggtctcctacaagattcgggactgaacccaggcgtgtgcccaggttagctgggtggtaaaaccgtccctg 36776596  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 33005097 - 33005224
Alignment:
Q  19 atatattacgaataataggataataatgggtacgtgggggactgcaatgacacctaggggtctcctacgagatcggggacagaccccgggcgtaggccca 118  Q
    |||||||| | |||||| |||||| || | |  |||| ||||| || || || ||| ||||||||||||||||| ||||| || || ||||| | | |||    
T  33005097 atatattatggataatatgataattatagatgagtggaggactacagtggcatctatgggtctcctacgagatccgggactgagccagggcgaatgtcca 33005196  T
Q  119 ggctagctgggtggtaaaaccgcccctg 146  Q
     |||||||||||||||||| ||||||||    
T  33005197 agctagctgggtggtaaaatcgcccctg 33005224  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 1110617 - 1110549
Alignment:
Q  77 ggtctcctacgagatcggggacagaccccgggcgtaggcccaggctagctgggtggtaaaaccgcccctg 146  Q
    |||||| || |||||| ||||| || |||||||||  ||| |||||||||||||||||||||||||||||    
T  1110617 ggtctcttatgagatccgggactgagcccgggcgtgtgcc-aggctagctgggtggtaaaaccgcccctg 1110549  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 6042099 - 6042067
Alignment:
Q  114 gcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||||||||||||||||||| |||||||||    
T  6042099 gcccaggctagctgggtggtaaatccgcccctg 6042067  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 6086970 - 6086824
Alignment:
Q  1 aacacaatgtaaataaggatatattacgaataataggataataatgggtacgtgggggactgcaatgacacctaggggtctcctacgagatcggggacag 100  Q
    ||||||||||||   | ||||||||| | |||||| |||||| || ||||||| | |||||||| || |||||| || || |||||||||||  ||||||    
T  6086970 aacacaatgtaacatatgatatattatggataatatgataattataggtacgttgaggactgcagtggcacctatggatcacctacgagatccaggacag 6086871  T
Q  101 accccgggcgtaggcccaggctagctgggtggtaaaaccgcccctgt 147  Q
    |  ||||||||  ||||||||||||||||||||||||||||||||||    
T  6086870 agtccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctgt 6086824  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 28627349 - 28627491
Alignment:
Q  1 aacacaatgtaaataaggatatattacgaataataggataataatgggtacgtgggggactgcaatgacacctaggggtctcctacgagatcggggacag 100  Q
    ||||||||||||   | ||||| | ||| |||||| |||||| || ||||||| | |||||||  || ||||||  |||||||||||||||| |||||||    
T  28627349 aacacaatgtaacatatgatatgtgacggataatatgataattataggtacgttgaggactgctgtggcacctataggtctcctacgagatccgggacag 28627448  T
Q  101 accccgggcgtaggcccaggctagctgggtggtaaaaccgccc 143  Q
    | |||||||||  ||||||||||||||||||||||||||||||    
T  28627449 agcccgggcgtgtgcccaggctagctgggtggtaaaaccgccc 28627491  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 29370069 - 29370037
Alignment:
Q  114 gcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||||||||||||||||||||| |||||||    
T  29370069 gcccaggctagctgggtggtaaaactgcccctg 29370037  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 47923298 - 47923182
Alignment:
Q  30 ataataggataataatgggtacgtgggggactgcaatgacacctaggggtctcctacgagatcggggacagaccccgggcgtaggcccaggctagctggg 129  Q
    |||||| |||||| || ||||||| | ||||||   || |||||| ||||||||||||||||| |||||||| |||||||||  ||||| ||||||||||    
T  47923298 ataatatgataattataggtacgttgaggactgttgtggcacctatgggtctcctacgagatctgggacagagcccgggcgtgtgcccaagctagctggg 47923199  T
Q  130 tggtaaaaccgcccctg 146  Q
    |||||||||||||||||    
T  47923198 tggtaaaaccgcccctg 47923182  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 46279556 - 46279588
Alignment:
Q  114 gcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||||||||||||||||||| |||||||||    
T  46279556 gcccaggctagctgggtggtaaatccgcccctg 46279588  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 776586 - 776656
Alignment:
Q  76 gggtctcctacgagatcggggacagaccccgggcgtaggcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||||||||||||| ||||| || |||||||||  |||||||||||||||||||||||||||||||||    
T  776586 gggtctcctacgagatccgggactgagcccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctg 776656  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 782240 - 782310
Alignment:
Q  76 gggtctcctacgagatcggggacagaccccgggcgtaggcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||||||||||||| ||||| || |||||||||  |||||||||||||||||||||||||||||||||    
T  782240 gggtctcctacgagatccgggactgagcccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctg 782310  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 11921051 - 11921138
Alignment:
Q  58 gactgcaatgacacctaggggtctcctacgagatcggggacagaccccgggcgtaggcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||| ||||||||| || |||||||||||||  ||||| || |||||||    |||||||||||||||||||||||||||||||||    
T  11921051 gactgcagtgacacctatgg-tctcctacgagattcgggactgagcccgggcacgtgcccaggctagctgggtggtaaaaccgcccctg 11921138  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 7361783 - 7361741
Alignment:
Q  104 ccgggcgtaggcccaggctagctgggtggtaaaaccgcccctg 146  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  7361783 ccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctg 7361741  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 40702711 - 40702668
Alignment:
Q  103 cccgggcgtaggcccaggctagctgggtggtaaaaccgcccctg 146  Q
    |||||||||  ||||||||||||||||||||||| |||||||||    
T  40702711 cccgggcgtgtgcccaggctagctgggtggtaaatccgcccctg 40702668  T

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