View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5931_low_96 (Length: 216)

Name: NF5931_low_96
Description: NF5931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5931_low_96
NF5931_low_96
[»] scaffold0376 (1 HSPs)
scaffold0376 (18-216)||(6348-6546)
[»] scaffold0279 (1 HSPs)
scaffold0279 (163-215)||(17850-17902)
[»] chr2 (2 HSPs)
chr2 (163-215)||(35056905-35056957)
chr2 (163-215)||(44860357-44860409)
[»] scaffold0623 (1 HSPs)
scaffold0623 (171-215)||(5974-6018)
[»] chr6 (3 HSPs)
chr6 (171-215)||(16488568-16488612)
chr6 (164-216)||(10294143-10294195)
chr6 (147-215)||(16766734-16766802)
[»] chr5 (4 HSPs)
chr5 (171-215)||(21814298-21814342)
chr5 (152-215)||(21542067-21542130)
chr5 (166-215)||(11685976-11686024)
chr5 (171-215)||(6401535-6401579)
[»] chr4 (3 HSPs)
chr4 (147-215)||(30982832-30982900)
chr4 (163-215)||(22234860-22234912)
chr4 (184-216)||(35723375-35723407)
[»] chr1 (3 HSPs)
chr1 (147-215)||(9828081-9828149)
chr1 (172-215)||(44482267-44482310)
chr1 (171-215)||(25934653-25934697)
[»] chr8 (4 HSPs)
chr8 (147-213)||(22652015-22652081)
chr8 (147-215)||(15816083-15816151)
chr8 (171-215)||(26902153-26902197)
chr8 (147-215)||(29447481-29447549)
[»] scaffold0123 (1 HSPs)
scaffold0123 (163-215)||(44495-44547)
[»] scaffold0003 (1 HSPs)
scaffold0003 (147-215)||(241631-241699)
[»] chr7 (1 HSPs)
chr7 (147-215)||(24339679-24339747)


Alignment Details
Target: scaffold0376 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 6546 - 6348
Alignment:
Q  18 atagagctacaagcagccctctaaaactcaccagagcactatcgcactgcaccatcacaaaatctcttttatgtnnnnnnntgtacaaaagctcctctta 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||    
T  6546 atagtgctacaagcagccctctaaaactcaccagagcactatcgcactgcaccatcacaaaacctcttttatgtaaaaaaatgtacaaaagctcctctta 6447  T
Q  118 tatataacctacgaagtacggacacttagttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattacat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6446 tatataacctacgaagtacggacacttagttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattacat 6348  T

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Target: scaffold0279 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 17850 - 17902
Alignment:
Q  163 gtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||| ||||||||| || ||||||||||||||||| ||||||||||||||    
T  17850 gtcggacacgtgtcgtgtccaacaccgatacgacaccgtcacatataattaca 17902  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 35056957 - 35056905
Alignment:
Q  163 gtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||||||||||    
T  35056957 gtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 35056905  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 44860409 - 44860357
Alignment:
Q  163 gtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||| | ||||||| || ||||| | ||||||||||||||||||||||||    
T  44860409 gtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattaca 44860357  T

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Target: scaffold0623 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 5974 - 6018
Alignment:
Q  171 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||||||||  | ||||||||||||||||||||||||||||||||    
T  5974 cgtgtcgtgttcgacaccgatacgacaccgacacatataattaca 6018  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 16488568 - 16488612
Alignment:
Q  171 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||    
T  16488568 cgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 16488612  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 10294195 - 10294143
Alignment:
Q  164 tcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattacat 216  Q
    |||||| | ||||||| || ||||| | |||||||||||||||||||||||||    
T  10294195 tcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattacat 10294143  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 16766802 - 16766734
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||| ||||| |||| ||||||| ||||| ||| || ||||||| ||||||||||||| | ||||||||    
T  16766802 ttaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattaca 16766734  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 21814342 - 21814298
Alignment:
Q  171 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||    
T  21814342 cgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 21814298  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 21542130 - 21542067
Alignment:
Q  152 cgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||| |||| ||||||| ||||||||| || ||||||| ||||||||||||| | ||||||||    
T  21542130 cgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattaca 21542067  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 11686024 - 11685976
Alignment:
Q  166 ggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||| ||||||||| || ||||||| ||||||||||||||||||||||||    
T  11686024 ggacacgtgtcgtgtccgacaccga-acgacaccgacacatataattaca 11685976  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 6401579 - 6401535
Alignment:
Q  171 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||||| || |||| || ||||||||||||||||||||||||    
T  6401579 cgtgtcgtgtccgacactgacacgacaccgacacatataattaca 6401535  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 30982832 - 30982900
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||| ||||| |||| ||||||| ||||||||| |  ||||||| ||||||||||||| ||||||||||    
T  30982832 ttaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 22234860 - 22234912
Alignment:
Q  163 gtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||| ||||||||| |  ||||||| |||||||||||||||| |||||||    
T  22234860 gtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattaca 22234912  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 35723375 - 35723407
Alignment:
Q  184 acaccgatacgacaccgacacatataattacat 216  Q
    ||||||||||||||| |||||||||||||||||    
T  35723375 acaccgatacgacactgacacatataattacat 35723407  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 9828149 - 9828081
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||||||||| |||| ||||||| ||||||||| |  |||| || |||||||||||||||| |||||||    
T  9828149 ttagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattaca 9828081  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 44482310 - 44482267
Alignment:
Q  172 gtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||||||| || ||||||| ||||||||||||||||||||||||    
T  44482310 gtgtcgtgtccgacaccgacacgacaccgacacatataattaca 44482267  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 25934697 - 25934653
Alignment:
Q  171 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||||| || ||||||| |||| |||||||||||||||||||    
T  25934697 cgtgtcgtgtccgacaccgacacgataccgacacatataattaca 25934653  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 22652081 - 22652015
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataatta 213  Q
    |||||||||| |||| ||||||| | ||||||| || ||||||| ||||||||||||| | ||||||    
T  22652081 ttagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaatta 22652015  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 15816083 - 15816151
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||| ||||| |||| ||||||  ||||||||| || ||||| | ||||||||||||| ||||||||||    
T  15816083 ttaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattaca 15816151  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 26902153 - 26902197
Alignment:
Q  171 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||||| || ||||  ||||||||||||||||||||||||||    
T  26902153 cgtgtcgtgtccgacactcatacgacaccgacacatataattaca 26902197  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 29447549 - 29447481
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||||| ||| |||| ||||||| | ||||||| |  ||||||| |||||||| |||||||||||||||    
T  29447549 ttagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattaca 29447481  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 44495 - 44547
Alignment:
Q  163 gtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    ||||||| ||||| ||| || ||||||| |||| |||||||||||||||||||    
T  44495 gtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattaca 44547  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 241699 - 241631
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||| ||||| |||| ||||||| ||||||||| || ||||| | |||||||||||||  |||||||||    
T  241699 ttaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattaca 241631  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 24339747 - 24339679
Alignment:
Q  147 ttagacgtgttccggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattaca 215  Q
    |||| ||||| |||| ||||||  ||||||||| || ||||||| ||||||||||||| | ||||||||    
T  24339747 ttaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattaca 24339679  T

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