View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_high_11 (Length: 391)
Name: NF5932_high_11
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 52271236 - 52270987
Alignment:
| Q |
16 |
gatgaaatgatgattatttttgtttttatatcaaaattgtaatgtgtaacaggagaagaacgctcaattcttttcaccggctgaagatgaaagcagcaga |
115 |
Q |
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| T |
52271236 |
gatgaaatgatgattatttttgtttttatatcaaaattgtaatgtgtaacaggagaagaacgctcaattcttttcaccggctgaagatgaaagcagcagg |
52271137 |
T |
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| Q |
116 |
ggagttttcaatctcataaagaaattaaatgttgttcctgataccaggataaaaggaagaactccatgtaagatctattaattttagtatttcacgaaat |
215 |
Q |
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| T |
52271136 |
ggagttttcaatctcataaagaaattaaatgttgttcctgataccaggataaaaggaagaattccatgtaagatctattaattttagtatttcacgaaat |
52271037 |
T |
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| Q |
216 |
tgacaaaacctatgcaatgtacaccaatcaggctttgagattatgataac |
265 |
Q |
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| T |
52271036 |
tgacaaaacctatgcaatgtacaccaatcaggctttgagattatgataac |
52270987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 238 - 373
Target Start/End: Complemental strand, 52270988 - 52270853
Alignment:
| Q |
238 |
accaatcaggctttgagattatgataacgctaacggtttgttccattattgtatgctgcagccatatttgatatgccacacattggccaaaacataacta |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270988 |
accaatcaggctttgagattatgataacgctaacggtttgttccattattgtatgctgcagccatatttgatatgccacacattggccaaaacataacta |
52270889 |
T |
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| Q |
338 |
aatcatcaaaggtaatatactttgaactgctagaac |
373 |
Q |
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| T |
52270888 |
aatcatcaaaggtaatatactttgaactgctagaac |
52270853 |
T |
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