View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5932_high_12 (Length: 376)

Name: NF5932_high_12
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5932_high_12
NF5932_high_12
[»] chr1 (4 HSPs)
chr1 (17-354)||(41085796-41086134)
chr1 (17-354)||(41090564-41090902)
chr1 (189-302)||(28080560-28080672)
chr1 (81-171)||(31983330-31983420)
[»] chr3 (2 HSPs)
chr3 (189-301)||(38556987-38557098)
chr3 (189-336)||(2010113-2010259)
[»] chr4 (3 HSPs)
chr4 (189-336)||(22465737-22465883)
chr4 (189-302)||(20634924-20635036)
chr4 (189-282)||(47744718-47744811)
[»] chr2 (3 HSPs)
chr2 (189-282)||(36363703-36363796)
chr2 (189-282)||(42493922-42494015)
chr2 (189-336)||(21553126-21553272)
[»] chr8 (1 HSPs)
chr8 (189-301)||(33932991-33933102)
[»] chr6 (1 HSPs)
chr6 (189-312)||(23250226-23250348)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 41085796 - 41086134
Alignment:
Q  17 atgattatctctttcaataatggtatatacacaaaccaatctttcctcgttttgagatttataacatatgtcggtgtttcttctcatttgatgaatgacg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41085796 atgattatctctttcaataatggtatatacacaaaccaatctttcctcgttttgagatttataacatatgtcggtgtttcttctcatttgatgaatgacg 41085895  T
Q  117 ctcttaaattgttcgtgaaaatgacaataaaatcaacatatcaacaaactattgtgtgttgagaattgtttc----atgtaaacatgaattacaataaat 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||    
T  41085896 ctcttaaattgttcgtgaaaatgacaataaaatcgacatatcaacaaactattgtgtgttgagaattgtttcatgtatgtaaacatgaattacaatagat 41085995  T
Q  213 gagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgttatgctagaatgaatgaatctccctt 312  Q
    ||| |||||| ||||| || ||| |||||| ||||||||||||||||||| | |||  |||||||| |||||| || ||||||||||||||||| |||||    
T  41085996 gaggtattcagttgagctgtctatgaggatttcaaagaatactctaaaatgattaagatgaaaatataatatg-taggctagaatgaatgaatccccctt 41086094  T
Q  313 actttctaagtacaatcttttatatgactattacttttccta 354  Q
     |||||||||| |||| |||||||  ||||||||||||||||    
T  41086095 gctttctaagtgcaatattttata--actattacttttccta 41086134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 41090564 - 41090902
Alignment:
Q  17 atgattatctctttcaataatggtatatacacaaaccaatctttcctcgttttgagatttataacatatgtcggtgtttcttctcatttgatgaatgacg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41090564 atgattatctctttcaataatggtatatacacaaaccaatctttcctcgttttgagatttataacatatgtcggtgtttcttctcatttgatgaatgacg 41090663  T
Q  117 ctcttaaattgttcgtgaaaatgacaataaaatcaacatatcaacaaactattgtgtgttgagaattgttt----catgtaaacatgaattacaataaat 212  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||| ||    
T  41090664 ctcttaaattgttcttgaaaatgacaataaaatcgacatatcaacaaactattgtgtgttgagaattgttttatgtatgtaaacatgaattacaatagat 41090763  T
Q  213 gagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgttatgctagaatgaatgaatctccctt 312  Q
    ||| |||||| ||||| || ||| |||||| ||||||||||||||||||| | |||  |||||||| |||||| || ||||||||||||||||| |||||    
T  41090764 gagttattcagttgagctgtctatgaggatttcaaagaatactctaaaatgattaagatgaaaatataatatg-taggctagaatgaatgaatccccctt 41090862  T
Q  313 actttctaagtacaatcttttatatgactattacttttccta 354  Q
     |||||||||| |||| |||||||  ||||||||||||||||    
T  41090863 gctttctaagtgcaatattttata--actattacttttccta 41090902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 28080672 - 28080560
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtta 288  Q
    |||||||||| |||||||||| ||||| |||||| | ||| ||| || ||||| | | |||||||||||||||| ||||| ||||| ||||||| | |||    
T  28080672 atgtaaacataaattacaatagatgagttattcagtggagctgcttatgaggagcaccaagaatactctaaaatgactaaggtgaagatacaatgt-tta 28080574  T
Q  289 tgctagaatgaatg 302  Q
     |||||||||||||    
T  28080573 ggctagaatgaatg 28080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 31983330 - 31983420
Alignment:
Q  81 catatgtcggtgtttcttctcatttgatgaatgacgctcttaaattgttcgtgaaaatgacaataaaatcaacatatcaacaaactattgt 171  Q
    ||||||| ||||||| |||||||||| |||| |||| | || | ||||||||||||||| | ||||||||||||  ||||||||| |||||    
T  31983330 catatgttggtgttttttctcatttggtgaaggacgttttttatttgttcgtgaaaatgcccataaaatcaacacgtcaacaaaccattgt 31983420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 301
Target Start/End: Complemental strand, 38557098 - 38556987
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtta 288  Q
    ||||||||||||||||||||| |||||||||||| | ||| |||||| ||||| ||| |||||||||||||||| ||||| ||||||||||||| || ||    
T  38557098 atgtaaacatgaattacaatagatgagatattcagtggagctgcctatgaggagctccaagaatactctaaaatgactaaggtgaaaatacaatgtg-ta 38557000  T
Q  289 tgctagaatgaat 301  Q
     ||||||||||||    
T  38556999 ggctagaatgaat 38556987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 2010113 - 2010259
Alignment:
Q  189 atgtaaacatgaatt-acaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtt 287  Q
    ||||||||||||||| |||||| |||||||||||    ||| || ||| ||||| ||| | |||||||||||||| |||||  ||||||||||  ||| |    
T  2010113 atgtaaacatgaatttacaatagatgagatattcttaggagctgtctatgaggagctccatgaatactctaaaatgactaagatgaaaataca--atggt 2010210  T
Q  288 atgctagaatgaatgaatctcccttactttctaagtacaatcttttata 336  Q
    | ||||||||||||||  | | ||| |||||||||| | ||| ||||||    
T  2010211 aggctagaatgaatgaccccctcttgctttctaagtgccatcctttata 2010259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 22465737 - 22465883
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtta 288  Q
    |||||||||||||||||||||||||||||||| |   ||| ||||||||| || ||| |||||||||||||||| | ||| ||||||||||||| || ||    
T  22465737 atgtaaacatgaattacaataaatgagatatttagcggagctgcctacgaagagctccaagaatactctaaaatgaataaggtgaaaatacaatgtg-ta 22465835  T
Q  289 tgctagaatgaatgaatctcccttactttctaagtacaatcttttata 336  Q
     |||| |||||||||||| | ||| ||||||||||   ||||||||||    
T  22465836 ggctaaaatgaatgaatccctcttgctttctaagtgtcatcttttata 22465883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 20635036 - 20634924
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtta 288  Q
    ||||||||||||||||||||| |||| ||||||||| ||| ||||||  || | ||| |||||||||||||||| ||||| ||||||||||||| || ||    
T  20635036 atgtaaacatgaattacaatagatgaaatattcactggagctgcctaaaagtagctccaagaatactctaaaatgactaaggtgaaaatacaatgtg-ta 20634938  T
Q  289 tgctagaatgaatg 302  Q
     |||||||||||||    
T  20634937 ggctagaatgaatg 20634924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 47744718 - 47744811
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaat 282  Q
    ||||||| ||||||||||||| |||||||||||| | ||| | |||| ||||| ||| |||||||||||||||| ||||| |||||||||||||    
T  47744718 atgtaaatatgaattacaatagatgagatattcagtggagctacctatgaggagctccaagaatactctaaaatgactaaggtgaaaatacaat 47744811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 36363796 - 36363703
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaat 282  Q
    ||||||||||||||||||||| |||||||||||| | ||| |||||| ||||| ||| |||||||||||||||| ||||| |||||||||||||    
T  36363796 atgtaaacatgaattacaatagatgagatattcagtggagctgcctatgaggagctccaagaatactctaaaatgactaaggtgaaaatacaat 36363703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 42493922 - 42494015
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaat 282  Q
    ||||||||||||||||||||| || ||||||| | | |||||| ||| ||||| ||| |||||||||||||||| ||||| || ||||||||||    
T  42493922 atgtaaacatgaattacaatagattagatatttagtggagttgtctatgaggagctccaagaatactctaaaatgactaaggtaaaaatacaat 42494015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 336
Target Start/End: Original strand, 21553126 - 21553272
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtta 288  Q
    ||||||||||||||||||||| |||||  ||||| | ||| | ||||   |||  || |||||||||||||||| ||||  || |||||| ||||||| |    
T  21553126 atgtaaacatgaattacaatagatgaggcattcaatggagcttcctattcggagttccaagaatactctaaaatgactagggtcaaaataaaatatgt-a 21553224  T
Q  289 tgctagaatgaatgaatctcccttactttctaagtacaatcttttata 336  Q
     | ||||||||||| ||| ||||| |||||||||||| ||||||||||    
T  21553225 ggttagaatgaatgtatcccccttgctttctaagtaccatcttttata 21553272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 33932991 - 33933102
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtta 288  Q
    ||||||||||||||||||||| ||||| |||||| | ||| | |||| ||||| ||| |||||||||||||||| ||||| ||||||| |||||  ||||    
T  33932991 atgtaaacatgaattacaatagatgagctattcagtggagcttcctatgaggagctctaagaatactctaaaatgactaaggtgaaaacacaat-ggtta 33933089  T
Q  289 tgctagaatgaat 301  Q
     ||||||||||||    
T  33933090 agctagaatgaat 33933102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 23250348 - 23250226
Alignment:
Q  189 atgtaaacatgaattacaataaatgagatattcacttgagttgcctacgaggatctcaaagaatactctaaaataactaaagtgaaaatacaatatgtta 288  Q
    ||||||||||||||||||||| ||||| |||||| | ||| ||| |  ||||| ||  |||||||||||||||| ||||| || |||||||||| | |||    
T  23250348 atgtaaacatgaattacaatagatgagctattcagtagagctgcatgtgaggagctttaagaatactctaaaatgactaaggttaaaatacaatgt-tta 23250250  T
Q  289 tgctagaatgaatgaatctccctt 312  Q
     ||||||||||||||||| |||||    
T  23250249 agctagaatgaatgaatccccctt 23250226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University