View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5932_high_19 (Length: 326)
Name: NF5932_high_19
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 11672421 - 11672705
Alignment:
| Q |
18 |
acaaacagcagttacatgcagggaggagttgatttgatttatagt---aattacgtacaatttacgaataaatcgaaataattaatcaactttaatgtca |
114 |
Q |
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| T |
11672421 |
acaaacagcagttacatgcaaggaggagttgatttgatttatagtagtaattacgtacaatttacgaataaatcaaaataattaatcaactttaatgtca |
11672520 |
T |
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| Q |
115 |
attttagaaatatcatagttttaagaggatgcatagggttcccctcnnnnnnngaggatcaaaaataaaatctaggactattaaannnnnnngttcaatt |
214 |
Q |
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| T |
11672521 |
attttagaaatatcatagttttaagaggatgcatagggttcccctc-aaaaaagaggatcaaaaataaaatctaggactattaaatttttttgttcaatt |
11672619 |
T |
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| Q |
215 |
tcaattatcaccaccgtaaaaagaacttattactaattgtccttattaattcccaatcccttgtaaccgtacatattcttggacat |
300 |
Q |
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| T |
11672620 |
tcaattatcaccaccgtaaaaagaacttattactaatagtccttattaattcccaatcccttgtaaccgtacatattattgcacat |
11672705 |
T |
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