View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5932_high_21 (Length: 321)
Name: NF5932_high_21
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5932_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 5476374 - 5476070
Alignment:
| Q |
8 |
gaacatgattgatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttgc |
107 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5476374 |
gaacatgattgatctctactagacagaacccaagacttaaagttcttaaaactattttcatcccacgacggaatatatgtgagagtagtgagacgtttgc |
5476275 |
T |
|
| Q |
108 |
aaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtggaggagtatgcagtcaggtaactcact |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5476274 |
aaagatccttccatcgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcattatgtggaggagtatgcagtcaggtaactcact |
5476175 |
T |
|
| Q |
208 |
aatcctatttcccgcctctgtttcatcagtcccctacaaagtttccgattggataaataattaatttgacatttatagcataagcactactaatacaagt |
307 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
5476174 |
aatcctatttcctgcctctgtttcatcagtcccctacaaagtttccgattggataaataatcaattagacatatatagcataagcactactaatataagt |
5476075 |
T |
|
| Q |
308 |
attat |
312 |
Q |
| |
|
||||| |
|
|
| T |
5476074 |
attat |
5476070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 8403836 - 8403527
Alignment:
| Q |
7 |
ggaacatgattgatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttg |
106 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
8403836 |
ggaacatgattgatctctactagacagaacccaagactgaaagttcttaaaactactttcatcccacgacggaatatatgcgagagtagtgagacgtttg |
8403737 |
T |
|
| Q |
107 |
caaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtggaggagtatgcagtcaggtaactcac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8403736 |
caaagatccttccatcgtttagacaagatgcaagtccgaacagcgtctcgtgcttcaagaaaactcattatgtggaggagtatgcagtcaggtaactcac |
8403637 |
T |
|
| Q |
207 |
taatcctatttc------ccgcctctgtttcatcagtcccctacaaagtttccgattggataaataattaatttgacatttatagcataagcactactaa |
300 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
8403636 |
caatcctatttcttctattttcctctgtttcttcagttccctacaaagtttctcattggataaataattaattaaacatttatagcataagcactacgaa |
8403537 |
T |
|
| Q |
301 |
tacaagtatt |
310 |
Q |
| |
|
|| ||||||| |
|
|
| T |
8403536 |
tataagtatt |
8403527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 8356409 - 8356617
Alignment:
| Q |
7 |
ggaacatgattgatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttg |
106 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| | ||||||||||||||| || | | | |||||||||||||||||| ||| ||| |||||| |
|
|
| T |
8356409 |
ggaacatgaatgatctctacaagacagaacccaagaataaaagttcttaaaact---ttgagctgaagacggaatatatgtgagaatagggaggcgtttg |
8356505 |
T |
|
| Q |
107 |
caaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtggaggagtatgcagtcaggtaactcac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||| ||||||| | || |||||| || ||||||| |
|
|
| T |
8356506 |
caaagatccttccatcgtttagacaagatgcaagtccgaacaacatcttctgcttcaagaaaactcaatatgtggaccaataagcagtctggcaactcac |
8356605 |
T |
|
| Q |
207 |
taatcctatttc |
218 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8356606 |
taatcctatttc |
8356617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 9138961 - 9139103
Alignment:
| Q |
76 |
cggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatc |
175 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
9138961 |
cggagtatatgtgagagtagtgaggcatttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatcttgtgcttcaagaaaactcaat |
9139060 |
T |
|
| Q |
176 |
atgtggaggagtatgcagtcaggtaactcactaatcctatttc |
218 |
Q |
| |
|
|||||||| | |||||||||||| ||||||| ||||||||||| |
|
|
| T |
9139061 |
atgtggagcaatatgcagtcaggcaactcacaaatcctatttc |
9139103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 8359455 - 8359663
Alignment:
| Q |
7 |
ggaacatgattgatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttg |
106 |
Q |
| |
|
||||||||| |||||||||| || | |||||||||| |||||||||||||||| | || | || ||||||||||||||||||| |||||||||| |
|
|
| T |
8359455 |
ggaacatgagtgatctctactagaccgaacccaagagctaaagttcttaaaactttgggcag---aagatggaatatatgtgagagtagggagacgtttg |
8359551 |
T |
|
| Q |
107 |
caaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtggaggagtatgcagtcaggtaactcac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
8359552 |
caaagatccttccatcgtttagacaagatgcaagttcgaacagcgtctcgagctttcaaaaaactcattatgtggagcagtatgcagtcaggtaacttac |
8359651 |
T |
|
| Q |
207 |
taatcctatttc |
218 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
8359652 |
tgatcatatttc |
8359663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 8410820 - 8410656
Alignment:
| Q |
74 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactca |
173 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
8410820 |
gacggagtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactca |
8410721 |
T |
|
| Q |
174 |
tcatgtggaggagtatgcagtcaggtaactcactaatccta-tttcccgcctctgtttcatcagt |
237 |
Q |
| |
|
|| | ||| | || ||||||||| ||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
8410720 |
atatctagagcaataagcagtcaggcaactcactaatcctattttcccgcatctgtgtcttcagt |
8410656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 43144836 - 43144976
Alignment:
| Q |
78 |
gaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcat |
177 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| || |||||||||||||||| || |
|
|
| T |
43144836 |
gaatatatttgagagtagtgacacgtttgcaaagatccttccatcgcttagacaagatgcaagttcgaacaacgtctcgtgcttcaagaaaactcattat |
43144935 |
T |
|
| Q |
178 |
gtggaggagtatgcagtcaggtaactcactaatcctatttc |
218 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||| |
|
|
| T |
43144936 |
atggagcagtatgcagtcgggcaactcactaatccaatttc |
43144976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 8416473 - 8416330
Alignment:
| Q |
74 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactca |
173 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
8416473 |
gacggagtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaactca |
8416374 |
T |
|
| Q |
174 |
tcatgtggaggagtatgcagtcaggtaactcactaatcctattt |
217 |
Q |
| |
|
|| ||||| | || ||||||||| |||||||||||||||||| |
|
|
| T |
8416373 |
atatatggagcaataagcagtcaggcaactcactaatcctattt |
8416330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 8036362 - 8036498
Alignment:
| Q |
81 |
tatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtg |
180 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||| |||||||||| |||| ||||| |
|
|
| T |
8036362 |
tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg |
8036461 |
T |
|
| Q |
181 |
gaggagtatgcagtcaggtaactcactaatcctattt |
217 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
8036462 |
gagcaatatgcagtcaggcaactcactaatcctattt |
8036498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 74 - 215
Target Start/End: Original strand, 8041772 - 8041913
Alignment:
| Q |
74 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactca |
173 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||| || |||||||||||| || |
|
|
| T |
8041772 |
gacggagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaaccca |
8041871 |
T |
|
| Q |
174 |
tcatgtggaggagtatgcagtcaggtaactcactaatcctat |
215 |
Q |
| |
|
||||||| | |||||||||||| || ||||||||||||| |
|
|
| T |
8041872 |
atgtgtggagcaatatgcagtcaggcaaatcactaatcctat |
8041913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 8410891 - 8410843
Alignment:
| Q |
12 |
atgattgatctctacaagtcagaacccaagacttaaagttcttaaaact |
60 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
8410891 |
atgagtgatctctactggacagaacccaagacataaagttcttaaaact |
8410843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University