View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5932_high_24 (Length: 301)

Name: NF5932_high_24
Description: NF5932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5932_high_24
NF5932_high_24
[»] chr5 (1 HSPs)
chr5 (1-298)||(34693357-34693654)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 34693654 - 34693357
Alignment:
Q  1 catttttagttgaattttttatcccctcaaaaaatatttatcttgggnnnnnnnagtgatgtgaattttccannnnnnnnacaaggctaattaaacaaca 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||        ||||||||||||||||||        ||||||||||||||||||||    
T  34693654 catttttagttggattttttatcccctcaaaaaatatttatcttggttttttttagtgatgtgaattttccattttttttacaaggctaattaaacaaca 34693555  T
Q  101 caaaaaggaaacggaacaagaaaggcaaatctaattcataagaaagtaaattttcaatgcatcattctatgacttatgaattagcaaactggaatttgga 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34693554 caaaaaggaaacggaacaagaaaggcaaatctatttcataagaaagtaaattttcaatgcatcattctatgacttatgaattagcaaactagaatttgga 34693455  T
Q  201 gagactttaaacttgagtataaaatttgcacacgaattttcttctcctaaagtataagtgatagagacattattttgagagttgaggtctttaatatt 298  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34693454 gagactttaaacttgagtataaaatttgcacactaattttcttctcctaaagtataagtgatagagacattattttgagagatgaggtctttaatatt 34693357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University